Gene detail information of Glyur000092s00007533.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55580.1 | 2.00E-154 | Mitochondrial transcription termination factor family protein |
| NR | XP_006595699.1 | 1.19E-21 | PREDICTED: mTERF domain-containing protein 1, mitochondrial-like isoform X1 [Glycine max] |
| trEMBL | tr|K7M4D9|K7M4D9_SOYBN | 4.00E-22 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G01940.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00092 | 260448 | 264205 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | mTERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000092s00007533.3 | PF02536.9 | mTERF | 152 | 324 | 8.60E-20 |
| Glyur000092s00007533.3 | PF02536.9 | mTERF | 327 | 408 | 4.80E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.496 |
| SRR1783600 | control | 2.527 |
| SRR1783602 | moderate drought stress | 2.696 |
| SRR1811619 | moderate drought stress | 2.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.258 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.151 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.571 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.762 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.355 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.501 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.581 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.079 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.137 |
| SRR2967015 | Control (Tissue:root) | 4.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.289 |
| SRR9715740 | Leave | 17.207 |
| SRR9715741 | Leave | 8.840 |
| SRR9715739 | Root | 0.149 |
| SRR9715742 | Root | 3.657 |
| SRR9715743 | Root | 2.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.107 |
| SRR8749028 | MeJA induced 9h | 4.246 |
| SRR8749029 | MeJA induced 9h | 2.666 |
| SRR8749030 | Uninduced | 1.181 |
| SRR8749031 | Uninduced | 3.455 |
| SRR8749032 | Uninduced | 2.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.882 |
| SRR8400027 | Control-Root | 3.464 |