Gene detail information of Glyur000092s00007536.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48150.2 | 5.00E-164 | GRAS family transcription factor |
| NR | KHN23866.1 | 0 | Scarecrow-like protein 5 [Glycine soja] |
| Swissprot | tr|Q9LDL7|PAT1_ARATH | 0 | Scarecrow-like transcription factor PAT1 |
| trEMBL | tr|I1M6J1|I1M6J1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G01960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00092 | 270204 | 271820 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000092s00007536.1 | PF03514.9 | GRAS | 168 | 538 | 1.90E-128 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.255 |
| SRR1783600 | control | 18.047 |
| SRR1783602 | moderate drought stress | 27.958 |
| SRR1811619 | moderate drought stress | 27.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.342 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.620 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 69.712 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 66.974 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.994 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.083 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.810 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.114 |
| SRR2868004 | Drought Stress(Tissue:root) | 55.811 |
| SRR2967015 | Control (Tissue:root) | 36.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.752 |
| SRR9715740 | Leave | 29.006 |
| SRR9715741 | Leave | 35.103 |
| SRR9715739 | Root | 4.950 |
| SRR9715742 | Root | 13.699 |
| SRR9715743 | Root | 13.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.980 |
| SRR8749028 | MeJA induced 9h | 12.227 |
| SRR8749029 | MeJA induced 9h | 13.935 |
| SRR8749030 | Uninduced | 16.112 |
| SRR8749031 | Uninduced | 29.987 |
| SRR8749032 | Uninduced | 22.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.557 |
| SRR8400027 | Control-Root | 15.317 |