Gene detail information of Glyur000093s00009371.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60710.10Zinc finger (C3HC4-type RING finger) family protein
NRXP_004506036.10PREDICTED: uncharacterized protein sll0103-like isoform X1 [Cicer arietinum]
COGYP_004450159.12.00E-21von Willebrand factor A [Haliscomenobacter hydrossis DSM 1100]
trEMBLtr|G7JND0|G7JND0_MEDTR0Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES88560.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000936763972913-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000093s00009371.2PF13639.1zf-RING_2791241.10E-09
Glyur000093s00009371.2PF00092.23VWA2714485.80E-24
Glyur000093s00009371.2PF14624.1Vwaint6206933.70E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.388
SRR1783600control23.189
SRR1783602moderate drought stress19.277
SRR1811619moderate drought stress18.946

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.493
DRR006520Root Summer glycyrrhizin high producing strain6.344
DRR006521Root Winter glycyrrhizin high producing strain39.816
DRR006522Root Winter glycyrrhizin high producing strain38.497
DRR006523Root Summer glycyrrhizin low producing strain7.722
DRR006524Root Summer glycyrrhizin low producing strain7.774
DRR006525Leaf Summer glycyrrhizin high producing strain24.378
DRR006526Leaf Summer glycyrrhizin high producing strain24.421

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.376
SRR2868004Drought Stress(Tissue:root)39.555
SRR2967015Control (Tissue:root)27.639

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.942
SRR9715740Leave21.225
SRR9715741Leave32.437
SRR9715739Root18.348
SRR9715742Root32.318
SRR9715743Root26.398

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.088
SRR8749028MeJA induced 9h60.507
SRR8749029MeJA induced 9h75.011
SRR8749030Uninduced39.937
SRR8749031Uninduced40.233
SRR8749032Uninduced57.749

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.183
SRR8400027Control-Root32.111

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved