Gene detail information of Glyur000093s00009394.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G05160.10AMP-dependent synthetase and ligase family protein
NRXP_006591122.10PREDICTED: 4-coumarate--CoA ligase-like 7-like isoform X2 [Glycine max]
COGYP_003291469.12.00E-124AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
Swissprottr|Q9M0X9|4CLL7_ARATH04-coumarate--CoA ligase-like 7
trEMBLtr|I1LL16|I1LL16_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G20020.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00093233015237794-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K019044CL EC:6.2.1.12 Phenylalanine metabolism map00360
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000093s00009394.1PF00501.23AMP-binding721714.90E-21
Glyur000093s00009394.1PF00501.23AMP-binding2424609.40E-61
Glyur000093s00009394.1PF13193.1AMP-binding_C4685432.20E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.122
SRR1783600control0.110
SRR1783602moderate drought stress0.103
SRR1811619moderate drought stress0.133

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.052
DRR006520Root Summer glycyrrhizin high producing strain0.062
DRR006521Root Winter glycyrrhizin high producing strain0.223
DRR006522Root Winter glycyrrhizin high producing strain0.276
DRR006523Root Summer glycyrrhizin low producing strain0.076
DRR006524Root Summer glycyrrhizin low producing strain0.076
DRR006525Leaf Summer glycyrrhizin high producing strain4.904
DRR006526Leaf Summer glycyrrhizin high producing strain4.225

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.071
SRR2868004Drought Stress(Tissue:root)1.876
SRR2967015Control (Tissue:root)1.674

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.259
SRR9715740Leave2.099
SRR9715741Leave1.638
SRR9715739Root0.000
SRR9715742Root0.103
SRR9715743Root0.233

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.509
SRR8749028MeJA induced 9h1.543
SRR8749029MeJA induced 9h1.127
SRR8749030Uninduced0.798
SRR8749031Uninduced0.298
SRR8749032Uninduced0.477

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.456
SRR8400027Control-Root0.747

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved