Gene detail information of Glyur000093s00009404.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28110.1 | 2.00E-162 | Exostosin family protein |
| NR | XP_003538175.1 | 0 | PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7-like [Glycine max] |
| COG | YP_677520.1 | 1.00E-07 | hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|Q9ZUV3|IRX7_ARATH | 0 | Probable glucuronoxylan glucuronosyltransferase IRX7 |
| trEMBL | tr|V7AFK6|V7AFK6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW04319.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00093 | 313899 | 316228 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000093s00009404.1 | PF03016.10 | Exostosin | 94 | 392 | 4.20E-76 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.956 |
| SRR1783600 | control | 4.008 |
| SRR1783602 | moderate drought stress | 1.873 |
| SRR1811619 | moderate drought stress | 1.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.228 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.758 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.554 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.239 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.023 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 43.764 |
| SRR2868004 | Drought Stress(Tissue:root) | 65.050 |
| SRR2967015 | Control (Tissue:root) | 59.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.791 |
| SRR9715740 | Leave | 14.917 |
| SRR9715741 | Leave | 7.263 |
| SRR9715739 | Root | 2.185 |
| SRR9715742 | Root | 12.512 |
| SRR9715743 | Root | 10.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.905 |
| SRR8749028 | MeJA induced 9h | 94.800 |
| SRR8749029 | MeJA induced 9h | 161.229 |
| SRR8749030 | Uninduced | 63.653 |
| SRR8749031 | Uninduced | 113.117 |
| SRR8749032 | Uninduced | 124.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.186 |
| SRR8400027 | Control-Root | 13.223 |