Gene detail information of Glyur000093s00009410.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08130.10DNA ligase 1
NRKEH29955.10DNA ligase I, ATP-dependent protein [Medicago truncatula]
COGYP_023450.14.00E-107ATP-dependent DNA ligase [Picrophilus torridus DSM 9790]
Swissprottr|Q42572|DNLI1_ARATH0DNA ligase 1 (Precursor)
trEMBLtr|A0A072UVT2|A0A072UVT2_MEDTR0DNA ligase {ECO:0000256|RuleBase:RU000617}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00093349883357697-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10747LIG1 EC:6.5.1.1 6.5.1.6 6.5.1.7 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006310  DNA recombination

GO:0051103  DNA ligation involved in DNA repair

GO:0071897  DNA biosynthetic process


molecular_function

GO:0003677  DNA binding

GO:0003909  DNA ligase activity

GO:0003910  DNA ligase (ATP) activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000093s00009410.1PF04675.9DNA_ligase_A_N1563354.50E-43
Glyur000093s00009410.1PF01068.16DNA_ligase_A_M4016055.60E-59
Glyur000093s00009410.1PF04679.10DNA_ligase_A_C6307411.50E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.725
SRR1783600control19.554
SRR1783602moderate drought stress14.915
SRR1811619moderate drought stress15.113

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.051
DRR006520Root Summer glycyrrhizin high producing strain17.077
DRR006521Root Winter glycyrrhizin high producing strain7.781
DRR006522Root Winter glycyrrhizin high producing strain7.710
DRR006523Root Summer glycyrrhizin low producing strain10.171
DRR006524Root Summer glycyrrhizin low producing strain9.953
DRR006525Leaf Summer glycyrrhizin high producing strain7.456
DRR006526Leaf Summer glycyrrhizin high producing strain7.172

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.436
SRR2868004Drought Stress(Tissue:root)17.138
SRR2967015Control (Tissue:root)17.637

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.177
SRR9715740Leave6.926
SRR9715741Leave5.992
SRR9715739Root4.222
SRR9715742Root15.540
SRR9715743Root12.073

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.307
SRR8749028MeJA induced 9h20.792
SRR8749029MeJA induced 9h18.450
SRR8749030Uninduced2.747
SRR8749031Uninduced1.859
SRR8749032Uninduced1.906

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.329
SRR8400027Control-Root25.109

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved