Gene detail information of Glyur000094s00007832.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G28237.16.00E-151Pyridoxal-5'-phosphate-dependent enzyme family protein
NRXP_003610663.10Tryptophan synthase beta chain [Medicago truncatula]
COGYP_007060360.12.00E-165tryptophan synthase subunit beta [Synechococcus sp. PCC 6312]
Swissprottr|O50046|TRPB_CAMAC2.00E-179Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBLtr|G7K113|G7K113_MEDTR0Tryptophan synthase beta type 2 {ECO:0000313|EMBL:AES93621.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00094485710053+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01696trpB EC:4.2.1.20 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0000162  tryptophan biosynthetic process

GO:0006568  tryptophan metabolic process


molecular_function

GO:0004834  tryptophan synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000094s00007832.1PF00291.20PALP1244502.90E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.000
SRR1783600control0.000
SRR1783602moderate drought stress0.000
SRR1811619moderate drought stress0.000

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.947
DRR006520Root Summer glycyrrhizin high producing strain0.963
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.450
DRR006524Root Summer glycyrrhizin low producing strain0.408
DRR006525Leaf Summer glycyrrhizin high producing strain4.466
DRR006526Leaf Summer glycyrrhizin high producing strain4.523

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.087
SRR2868004Drought Stress(Tissue:root)0.136
SRR2967015Control (Tissue:root)0.174

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave235.163
SRR9715740Leave32.125
SRR9715741Leave336.993
SRR9715739Root0.462
SRR9715742Root11.158
SRR9715743Root10.789

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.024
SRR8749028MeJA induced 9h0.021
SRR8749029MeJA induced 9h0.109
SRR8749030Uninduced0.044
SRR8749031Uninduced0.104
SRR8749032Uninduced0.700

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.222
SRR8400027Control-Root0.367

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved