Gene detail information of Glyur000094s00007840.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06010.10Homeotic gene regulator
NRXP_004511345.10PREDICTED: transcription regulatory protein SNF2-like isoform X1 [Cicer arietinum]
COGYP_003307467.12.00E-81SNF2-related protein [Sebaldella termitidis ATCC 33386]
Swissprottr|F4J9M5|CHR12_ARATH0Probable ATP-dependent DNA helicase CHR12
trEMBLtr|I1LFS4|I1LFS4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G00640.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000945131858878+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding

GO:0042393  histone binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000094s00007840.1PF00176.18SNF2_N3826712.70E-77
Glyur000094s00007840.1PF00271.26Helicase_C7248031.20E-15
Glyur000094s00007840.1PF14619.1SnAC8929569.50E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.656
SRR1783600control18.802
SRR1783602moderate drought stress25.824
SRR1811619moderate drought stress25.769

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.191
DRR006520Root Summer glycyrrhizin high producing strain25.824
DRR006521Root Winter glycyrrhizin high producing strain28.878
DRR006522Root Winter glycyrrhizin high producing strain28.401
DRR006523Root Summer glycyrrhizin low producing strain21.450
DRR006524Root Summer glycyrrhizin low producing strain21.426
DRR006525Leaf Summer glycyrrhizin high producing strain12.116
DRR006526Leaf Summer glycyrrhizin high producing strain11.890

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.286
SRR2868004Drought Stress(Tissue:root)22.479
SRR2967015Control (Tissue:root)22.599

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.784
SRR9715740Leave11.459
SRR9715741Leave13.086
SRR9715739Root1.323
SRR9715742Root12.456
SRR9715743Root11.498

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.014
SRR8749028MeJA induced 9h24.701
SRR8749029MeJA induced 9h15.138
SRR8749030Uninduced12.685
SRR8749031Uninduced7.549
SRR8749032Uninduced7.664

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.427
SRR8400027Control-Root23.391

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved