Gene detail information of Glyur000094s00007844.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G19330.10ARM repeat protein interacting with ABF2
NRXP_003539157.10PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like isoform X1 [Glycine max]
COGYP_006545503.19.00E-06heat repeat-containing PBS lyase [Methanoculleus bourgensis MS2]
Swissprottr|B9DHT4|ARIA_ARATH0ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBLtr|I1LFS7|I1LFS7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G00660.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000947353880336-


Gene family

Gene familysubfamily
Transcription Factors FamilyTRAF
Ubiquitin FamilyBTB
Ubiquitin Family3-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005488  binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000094s00007844.3PF00514.18Arm5341.10E-06
Glyur000094s00007844.3PF00514.18Arm37761.20E-07
Glyur000094s00007844.3PF13646.1HEAT_2951971.60E-06
Glyur000094s00007844.3PF00651.26BTB3424447.70E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.151
SRR1783600control19.342
SRR1783602moderate drought stress29.686
SRR1811619moderate drought stress29.647

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.282
DRR006520Root Summer glycyrrhizin high producing strain26.308
DRR006521Root Winter glycyrrhizin high producing strain50.779
DRR006522Root Winter glycyrrhizin high producing strain48.129
DRR006523Root Summer glycyrrhizin low producing strain32.695
DRR006524Root Summer glycyrrhizin low producing strain32.644
DRR006525Leaf Summer glycyrrhizin high producing strain19.779
DRR006526Leaf Summer glycyrrhizin high producing strain19.284

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.401
SRR2868004Drought Stress(Tissue:root)43.217
SRR2967015Control (Tissue:root)50.785

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.301
SRR9715740Leave37.206
SRR9715741Leave44.950
SRR9715739Root15.848
SRR9715742Root30.131
SRR9715743Root25.373

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.940
SRR8749028MeJA induced 9h43.210
SRR8749029MeJA induced 9h24.073
SRR8749030Uninduced17.402
SRR8749031Uninduced17.779
SRR8749032Uninduced21.327

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.633
SRR8400027Control-Root42.569

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved