Gene detail information of Glyur000094s00007862.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14920.10Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
NRXP_006590402.10PREDICTED: uncharacterized protein LOC100801863 isoform X1 [Glycine max]
Swissprottr|F4KBP5|CHR4_ARATH3.00E-10Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|I1LFT6|I1LFT6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G00780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00094161656168579+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000094s00007862.1PF00628.24PHD7127541.90E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.595
SRR1783600control15.812
SRR1783602moderate drought stress18.505
SRR1811619moderate drought stress18.436

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.731
DRR006520Root Summer glycyrrhizin high producing strain19.512
DRR006521Root Winter glycyrrhizin high producing strain19.152
DRR006522Root Winter glycyrrhizin high producing strain18.717
DRR006523Root Summer glycyrrhizin low producing strain20.516
DRR006524Root Summer glycyrrhizin low producing strain20.245
DRR006525Leaf Summer glycyrrhizin high producing strain8.999
DRR006526Leaf Summer glycyrrhizin high producing strain8.975

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.446
SRR2868004Drought Stress(Tissue:root)31.941
SRR2967015Control (Tissue:root)31.120

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.571
SRR9715740Leave10.631
SRR9715741Leave13.539
SRR9715739Root2.021
SRR9715742Root15.769
SRR9715743Root13.372

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.088
SRR8749028MeJA induced 9h26.016
SRR8749029MeJA induced 9h15.725
SRR8749030Uninduced10.877
SRR8749031Uninduced11.171
SRR8749032Uninduced11.874

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.275
SRR8400027Control-Root31.930

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved