Gene detail information of Glyur000094s00007893.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48560.1 | 2.00E-57 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004492265.1 | 9.16E-178 | PREDICTED: transcription factor bHLH78-like [Cicer arietinum] |
| Swissprot | tr|Q9FJL4|BH078_ARATH | 2.00E-90 | Transcription factor bHLH78 |
| trEMBL | tr|I1KZ15|I1KZ15_SOYBN | 1.00E-171 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G46040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00094 | 321166 | 324923 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000094s00007893.1 | PF00010.21 | HLH | 377 | 424 | 4.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 78.714 |
| SRR1783600 | control | 77.973 |
| SRR1783602 | moderate drought stress | 76.998 |
| SRR1811619 | moderate drought stress | 77.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 53.689 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.988 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.621 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.660 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.923 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.353 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.406 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 51.893 |
| SRR2868004 | Drought Stress(Tissue:root) | 33.481 |
| SRR2967015 | Control (Tissue:root) | 44.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.855 |
| SRR9715740 | Leave | 1.348 |
| SRR9715741 | Leave | 1.158 |
| SRR9715739 | Root | 13.340 |
| SRR9715742 | Root | 32.836 |
| SRR9715743 | Root | 27.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.940 |
| SRR8749028 | MeJA induced 9h | 55.337 |
| SRR8749029 | MeJA induced 9h | 24.146 |
| SRR8749030 | Uninduced | 23.022 |
| SRR8749031 | Uninduced | 10.899 |
| SRR8749032 | Uninduced | 5.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 83.216 |
| SRR8400027 | Control-Root | 104.448 |