Gene detail information of Glyur000095s00007015.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06490.1 | 1.00E-17 | RING/U-box superfamily protein |
| NR | XP_003591673.1 | 7.28E-54 | Ring finger protein [Medicago truncatula] |
| Swissprot | tr|Q9FG21|ATL71_ARATH | 1.00E-20 | Putative RING-H2 finger protein ATL71 |
| trEMBL | tr|G7ZYD4|G7ZYD4_MEDTR | 3.00E-54 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES61924.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00095 | 28774 | 31476 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000095s00007015.1 | PF13639.1 | zf-RING_2 | 125 | 168 | 2.50E-14 |
| Glyur000095s00007015.1 | PF13639.1 | zf-RING_2 | 293 | 335 | 2.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.380 |
| SRR1783600 | control | 0.393 |
| SRR1783602 | moderate drought stress | 0.598 |
| SRR1811619 | moderate drought stress | 0.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.262 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.219 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.516 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.049 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.861 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.749 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.402 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.488 |
| SRR2967015 | Control (Tissue:root) | 5.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.790 |
| SRR9715740 | Leave | 0.691 |
| SRR9715741 | Leave | 1.895 |
| SRR9715739 | Root | 1.191 |
| SRR9715742 | Root | 1.676 |
| SRR9715743 | Root | 1.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.373 |
| SRR8749028 | MeJA induced 9h | 15.907 |
| SRR8749029 | MeJA induced 9h | 18.208 |
| SRR8749030 | Uninduced | 3.214 |
| SRR8749031 | Uninduced | 18.712 |
| SRR8749032 | Uninduced | 12.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.172 |
| SRR8400027 | Control-Root | 1.636 |