Gene detail

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Gene detail information of Glyur000095s00007026.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06880.2	1.00E-63	Transducin/WD40 repeat-like superfamily protein
NR	XP_004496090.1	0	PREDICTED: putative E3 ubiquitin-protein ligase LIN-like isoform X1 [Cicer arietinum]
COG	YP_001957949.1	1.00E-09	hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|C6L7U1\|LIN1_LOTJA	0	Putative E3 ubiquitin-protein ligase LIN-1 {ECO:0000250\|UniProtKB:D1FP53}
trEMBL	tr\|K7LKD4\|K7LKD4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G33851.3}

Sequence

Transcript Sequence

>Glyur000095s00007026.1
ATGGCNGGGAACTTCAGATTCATGATGGATCAGAAGGATATTGTTAGATTCTTGACCACAACTGTTGATAGTTTCATTCAAGACCGACTAATCAACAAAGAGCAAAGAAACCAACACAAAGAGCAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTGGTGACAAAGACACTGAGGTAGAATACTCTGATCAAGCAGTATTAGCTAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCCATCAACACCTATAACATGGAAACTAAGCTTGCCAGGCTGGATTATGCTGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGGGTGCCAAACTCCTACCTCTCAGCTTGGGCACACCTAAACCTATCCTACTTGTGGAAGTTGAGGAACAACATTCAGAATTGCATTTTCCATGCTCTTGAGATGTTCATTGTTGATCCTTTTTTCTCTCGGATTGATTTTGCTCCTGAGCTATGGAAAAGCCTCTTTCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCAGAGGAGAGGCACAAGCTTGTGATGGAAGTGATGCCTGACTCTTCTGATTTGTCCTTTACAGCCGACTTTGATCGGTTTTTCAACGAGTCTTTGGTGTATTCCATGAGGCCGCATCAGTTAGATAAATTGCAAAAACTGGAGCAGCTTTATGGAGAGTCCTTGGATGAGAACACAAGGCTATATGCAAAATACTATAATGATTGCATGAACTGTGATTCCACCTCAAGCAAGAAGGTGGTTCCTATGTTGCCAATTGCCGAGCCCCCAATGACTCCTTTGCATGAGCTGAGCCGGTCTGTTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCAGGGTTTTCTATGACAGGAAGATCCAAAGATGGTTTAAATGAAACAACCAGAGAGTGTTCAACTTCAAACCATTTGAAGGAGAAATCATCCATATGGGGTGCTAAGGAGAGCATAACTGAAGAGAATGAAGATGATTCGGATTCTGACCTTGATGATGCATCTGTAGATTCTGATAGAAACAATATTTTCTCACCTGAACTGAAGATGACCAAGGATGAGGATATTGAACCAAAAGTGGGTCTATCAAACCAGAAGAATCAAATACATTCTCCCAATATCTCCCCTTTGGTTTCCCCAAAAACTGCTCCAAATAATTCATCTACTAATCCTGATATACGTAGCAGTAAAAGAGAATCCAAGTTTTTGCATTTACTGTCTAATCGTTTCAGGGACTCAACTATTTCTGACTCTCTATCATCATCTCCAGACATGAGCTCTGATCATGTTTCCAATGGCGATGACGAAGTGATGGTCTTGAAAAATATTAAGAGGAAGAATGATAATCAAACACCAAGTATGAATCATGACAANGAGAATAGTCTGGTGCTGAATGACAGTTCCCTTTGTGAAAGTGATGATGGATATCAAAGCAGCACTTCATTGCCAAAATTGGAGAAACTGACTATTGGATCATCAAAACCACCCAAAGACTTTGTTTGCCCAATCACAGGTCAGATATTTGGTGACCCTGTCACCCTTGAGACTGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCAGAACAGGAAACACAACATGCCCCATCACACGACAGTCTCTATCTGCAAGCATCTTACCCAAAACAAACTATGTTTTAAAGAGATTGATAACATCATGGAAAGAACAGAATCCTGAGCTAGCTCAAGAATTCTCAAATTCTAACACACCAAGGGGTTCTTCATGTTCTCCCTCTGCAAAAGACATTGCAATGCTCTCCACTGTACAAAGAACAACTGATTTACCAAGTCATAAGAACAAAGAAGATTATATTACACAAAGGAGCAACAGATTTATGCGGGTTGCCGTCACAACATCTCCGACTAGTGTGCTGTCTCAAGCTGCAGTTGAAACAATTATGAATTCCTTGAAACCTTACATTTCAAGTCTNTGTACATCAGAAAACTTGCAGCAATGTGAAGAAGCGGTATTGGAAATAGCAAGATTGTGGAAGGATTCAAAGACTGATCCTCAGATTCATTCGTGTTTATCAAAGCCAACTGTCATAAGTGGNTTAGTGGAAATTCTCTCAGCTTCTCTGAATAGAGAAGTTCTGAGAACATCACTTTATATTCTTTCCGAACTACTCATTGCAGATGAAAGTGTNGGAGAAGCACTTAATAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTATGCTCAGCTTTCAGCACATGAACTTATACTCCCTCTTATCCAGGTGATCCAGAACAAAAATGAGGAGATAGATGATTTTCAGTTAGCTATAGACCCCAAAGATGCCGCCATAGCAATTCTTGAGCAAATTTTAATGGGAGGGGATGAATATNGCAGGTATCTTACTGCTTCAAGTGTTATTTCGGCAAATGGAATTCCGGCCTTGGCGAAATATTTGGAGAGAATGGAAGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGNTGTATGCAAGCTGAAAAAAGTTGCAAGAGCTTAATAGCAAATAGAATTGAATTGTCACCAGTTCTCGAATTATTTCATTCTGGAAATGATAGTGTGAGAGGAATCTNTGTGGAGTTTCTGTCAGAACTGGTTCAATTGAATAGAAGGACGTTCAGCAACCAGATATTACAGATAATCAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAACATCAAATTGCTGTTGCCAGTCTTCTTCTTCAGCTTGATCTGCTGGTTGAGCCACGGAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTCTCAAATACTCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACATGTCACTTCCTCCGGAAAGTCATATACTGAAGCTTGGTTGCTGAAGATTGCAGGATTTGATCAACCTTACAGTGCTTTAATGAAGGCTGAACAGTTGGGACAGTATGACAATGATTTGATGGAAACAATGGAGGATGAAAAAAATGCCATGAAATATTGGCAGAAAAGAGTAGCTTTTGTACTTTGCAATCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGACTGCCTAAAGAGTAATTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCGACATGGCTCACACACATGCTCTCTGCTCTTCCTGATACCGGTGTTAGGAATGTTGCTCGGAAATCCCTGCTTGANGAACTTATAAATGTCCTCCAGTCATCCAAGAATCTGGAGGAAAAGATCCTGGCTGCCCTGGCTTTGAAGACTTTCCTTAGTGATCCAACTGCTCACGAAGCACTTAGNGTTTATGCTAAAAGCATCTATAGAACCTTGAGGAAGCTGAAGAAATATTCAGTGGTNGCAGTTGATATTATGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGNTGTGGAGTTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTATCTGAATGGCCAGGTCTTGAGTGGACATTCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCACGAGTAATTCAAGAAACTCGTGAGCACACAAAAGCTGTAACATCTCTCTGTTCATCAGTTGATAGACTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGACAATTAAACCTGATGGGATTAAATGTATAGAGGTTCATGACGTTAAGGAGACAGTGCATGAGCTAACAGCCAATGCTGAATTGGCATGCTATGTAACTCAAGGAACNGGAATTAAGGCAAGCCTAATATATTTACAGGTTTTTAATTGGTCAGAGGCTCCAAAGCTCATCAATTTCAACAAATANGTGAAATCTCTTGCTGTTGCTGGGGACAAACTGTATTGCGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTGTCCAACAATACATCAAATTCATTCTTCACTGGTACAAGAAAACTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGGTTTCCTCTATGCTTGTGGCTCTTCTGTTGATGCAACCTCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTAGGATCACTCTCAACTGGACTTGACATCCATCGCTTAGCCATCAACAGTGACTTCATATTTGCTGGCACAAAATTTGGCACCATTGAGGTTTGGCTAAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATTACATCATTGGTGTCAGATGCTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTCTGGATTAA

Protein Sequence

>Glyur000095s00007026.1
MAGNFRFMMDQKDIVRFLTTTVDSFIQDRLINKEQRNQHKEQCAERLAAEDGSGDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQNCIFHALEMFIVDPFFSRIDFAPELWKSLFLPHMSSIVGWYSEERHKLVMEVMPDSSDLSFTADFDRFFNESLVYSMRPHQLDKLQKLEQLYGESLDENTRLYAKYYNDCMNCDSTSSKKVVPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSAGFSMTGRSKDGLNETTRECSTSNHLKEKSSIWGAKESITEENEDDSDSDLDDASVDSDRNNIFSPELKMTKDEDIEPKVGLSNQKNQIHSPNISPLVSPKTAPNNSSTNPDIRSSKRESKFLHLLSNRFRDSTISDSLSSSPDMSSDHVSNGDDEVMVLKNIKRKNDNQTPSMNHDXENSLVLNDSSLCESDDGYQSSTSLPKLEKLTIGSSKPPKDFVCPITGQIFGDPVTLETGQTYERKAIQEWLRTGNTTCPITRQSLSASILPKTNYVLKRLITSWKEQNPELAQEFSNSNTPRGSSCSPSAKDIAMLSTVQRTTDLPSHKNKEDYITQRSNRFMRVAVTTSPTSVLSQAAVETIMNSLKPYISSLCTSENLQQCEEAVLEIARLWKDSKTDPQIHSCLSKPTVISGLVEILSASLNREVLRTSLYILSELLIADESVGEALNSVDSDFDCLATLLKNGLAEAALLIYQLRPVYAQLSAHELILPLIQVIQNKNEEIDDFQLAIDPKDAAIAILEQILMGGDEYXRYLTASSVISANGIPALAKYLERMEGRRSVVSILLXCMQAEKSCKSLIANRIELSPVLELFHSGNDSVRGIXVEFLSELVQLNRRTFSNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHVTSSGKSYTEAWLLKIAGFDQPYSALMKAEQLGQYDNDLMETMEDEKNAMKYWQKRVAFVLCNHENGSIFQALEDCLKSNSLKMAKSCLVLATWLTHMLSALPDTGVRNVARKSLLXELINVLQSSKNLEEKILAALALKTFLSDPTAHEALXVYAKSIYRTLRKLKKYSVVAVDIMKALLNLNSVDVTEXWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHSDGTIKVWDARKRIPRVIQETREHTKAVTSLCSSVDRLYSGSLDKTIRVWTIKPDGIKCIEVHDVKETVHELTANAELACYVTQGTGIKASLIYLQVFNWSEAPKLINFNKXVKSLAVAGDKLYCGCSGYSIQEVDLSNNTSNSFFTGTRKLLGKQTIHSLQIHDGFLYACGSSVDATSGKIFSLSSKMVVGSLSTGLDIHRLAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	79549	86461	-

Gene family

Gene family	subfamily
Ubiquitin Family	U_box
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function GO:0004842 ubiquitin-protein transferase activity GO:0005488 binding GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007026.1	PF04564.10	U-box	511	581	6.00E-14
Glyur000095s00007026.1	PF00400.27	WD40	1209	1232	0.096
Glyur000095s00007026.1	PF00400.27	WD40	1240	1273	7.10E-07
Glyur000095s00007026.1	PF00400.27	WD40	1461	1489	0.038

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.910
SRR1783600	control	7.963
SRR1783602	moderate drought stress	4.513
SRR1811619	moderate drought stress	4.518

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.124
DRR006520	Root Summer glycyrrhizin high producing strain	0.160
DRR006521	Root Winter glycyrrhizin high producing strain	1.808
DRR006522	Root Winter glycyrrhizin high producing strain	1.783
DRR006523	Root Summer glycyrrhizin low producing strain	0.387
DRR006524	Root Summer glycyrrhizin low producing strain	0.465
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.098
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.103

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	39.005
SRR2868004	Drought Stress(Tissue:root)	48.873
SRR2967015	Control (Tissue:root)	36.099

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.176
SRR9715740	Leave	0.071
SRR9715741	Leave	0.224
SRR9715739	Root	0.871
SRR9715742	Root	4.978
SRR9715743	Root	4.334

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.919
SRR8749028	MeJA induced 9h	26.194
SRR8749029	MeJA induced 9h	27.282
SRR8749030	Uninduced	19.672
SRR8749031	Uninduced	36.442
SRR8749032	Uninduced	22.508

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	12.454
SRR8400027	Control-Root	10.668