Gene detail information of Glyur000095s00007044.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55750.17.00E-174BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
NRXP_004496077.10PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum]
Swissprottr|Q3ECP0|TFB1A_ARATH0Probable RNA polymerase II transcription factor B subunit 1-1
trEMBLtr|V7BED6|V7BED6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW16172.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00095160091170036+


Gene family

Gene familysubfamily
Transcription Factors FamilyBSD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006289  nucleotide-excision repair

GO:0006351  transcription, DNA-templated


cellular_component

GO:0000439  core TFIIH complex


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000095s00007044.2PF03909.12BSD1231643.10E-07
Glyur000095s00007044.2PF03909.12BSD1862291.80E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.972
SRR1783600control21.786
SRR1783602moderate drought stress27.895
SRR1811619moderate drought stress27.517

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.417
DRR006520Root Summer glycyrrhizin high producing strain25.795
DRR006521Root Winter glycyrrhizin high producing strain29.715
DRR006522Root Winter glycyrrhizin high producing strain28.149
DRR006523Root Summer glycyrrhizin low producing strain27.815
DRR006524Root Summer glycyrrhizin low producing strain27.171
DRR006525Leaf Summer glycyrrhizin high producing strain9.737
DRR006526Leaf Summer glycyrrhizin high producing strain9.874

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.467
SRR2868004Drought Stress(Tissue:root)21.362
SRR2967015Control (Tissue:root)20.647

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.194
SRR9715740Leave11.389
SRR9715741Leave13.938
SRR9715739Root1.368
SRR9715742Root10.539
SRR9715743Root9.004

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.031
SRR8749028MeJA induced 9h27.076
SRR8749029MeJA induced 9h8.351
SRR8749030Uninduced18.156
SRR8749031Uninduced5.191
SRR8749032Uninduced6.074

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.190
SRR8400027Control-Root23.027

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved