Gene detail

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Gene detail information of Glyur000095s00007058.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06260.1	4.00E-145	galacturonosyltransferase-like 4
NR	XP_004496068.1	0	PREDICTED: probable galacturonosyltransferase-like 4-like [Cicer arietinum]
COG	YP_007062961.1	3.00E-20	LPS:glycosyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q9M8J2\|GATL4_ARATH	0	Probable galacturonosyltransferase-like 4
trEMBL	tr\|G7I2W3\|G7I2W3_MEDTR	0	CAZy family GT8 glycosyltransferase {ECO:0000313\|EMBL:AES61868.2}

Sequence

Transcript Sequence

>Glyur000095s00007058.1
ATGGCCTTTGGAATTAACCCACCACACCAACAACTCCTTGGCCTCCTGTCTTTCCTNTCCTTGTTCTTCTCCTTGTTCCTCGCCATCAACATTAACCATGTTGTCGCTGCCGCGGTCACCACCACAACAACAATGGCAATCCACCTCGACGTGGTTCGAAAGCCNGCCCCGGACGTCCCTATCTTCAGGGAAGCCCCAGCGTTCCGCAACGGTGGCACGTGCAACAAGGACAGCAAAATCCATGTTTCCATGACGTTGGACTCAAACTACCTCAGGGGCACCATGGCAGCCGTCCTCTCCATATTGCAGCACTCCACGTGTCCAGAAAACGTGGAGTTCCATTTCCTNTGGTCCAGGTTCGAGCCGCAGGTGTTTTTGAGCATCAGGTCCACCTTCCCTTACCTCAAGTTCAAGGTCTACCGCTTCAAATCCAACAGGGTACGTGGCATGATCTCAAAGTCCATTCGCCAAGCATTGGANCAGCCTTTAAACTACGCACGTATCTACCTCTCCGACATCCTCCCAGATTACGTGAAGCGCGTGATATACCTGGACTCTGACATCATCGTTGTTGATGATATTGCAAAGCTTTGGGAGGTTGACTTGCAAGGGAAGGTATTGGCTGCACCAGAGTATTGCCACGCGAATTTCACNGAGTACTTCACGGACTTGTTCTGGTCTGACCCCGTGTTGTCTCGCATATTCGAGGGTAGGAAGCCATGCTATTTCAACACGGGNGTGATGGTGATGGATGTGGAGAAGTGGAGGGAAGGAGGGTACACACATAAGGTGGAGAAGTGGATGGCAGTGCAGAAGCAGAAGAGGATTTACCATTTGGGGTCTTTGCCTCCTTTTCTTCTTGTTCTGGCTGGGGATTTGAAGAGTGTTGACCATAGGTGGAACCAGCATGGGTTGGGTGGGGATAACCTTGAGGGGAAGTGTAGGAGTTTGCATCCTGGGCCTATTAGTTTGTTGCATTGGAGTGGGAAAGGGAAGCCTTGGTTGAGGTTGGATTCAAGGAGACCTTGCTCTGTTGATCATCTTTGGGCACCCTATGATCTCTATCGTCCAAACACTCATTCCTTGGAAGAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	253378	254472	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007058.1	PF01501.15	Glyco_transf_8	81	337	1.50E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.115
SRR1783600	control	0.164
SRR1783602	moderate drought stress	1.042
SRR1811619	moderate drought stress	1.066

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.461
DRR006520	Root Summer glycyrrhizin high producing strain	0.672
DRR006521	Root Winter glycyrrhizin high producing strain	0.497
DRR006522	Root Winter glycyrrhizin high producing strain	0.696
DRR006523	Root Summer glycyrrhizin low producing strain	0.908
DRR006524	Root Summer glycyrrhizin low producing strain	0.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.318
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.593

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.087
SRR2868004	Drought Stress(Tissue:root)	0.148
SRR2967015	Control (Tissue:root)	0.210

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.182
SRR9715740	Leave	0.042
SRR9715741	Leave	0.320
SRR9715739	Root	0.068
SRR9715742	Root	0.213
SRR9715743	Root	0.003

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.086
SRR8749028	MeJA induced 9h	1.316
SRR8749029	MeJA induced 9h	0.095
SRR8749030	Uninduced	0.173
SRR8749031	Uninduced	0.070
SRR8749032	Uninduced	0.156

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.521
SRR8400027	Control-Root	0.748