Gene detail information of Glyur000095s00007063.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03000.2 | 1.00E-106 | RING/U-box superfamily protein |
| NR | XP_006575096.1 | 0 | PREDICTED: putative E3 ubiquitin-protein ligase RF298-like isoform X1 [Glycine max] |
| Swissprot | tr|Q0WPJ7|RF298_ARATH | 5.00E-151 | Putative E3 ubiquitin-protein ligase RF298 |
| trEMBL | tr|K7K8G2|K7K8G2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G16940.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00095 | 291626 | 295962 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000095s00007063.1 | PF13920.1 | zf-C3HC4_3 | 641 | 689 | 2.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.711 |
| SRR1783600 | control | 4.733 |
| SRR1783602 | moderate drought stress | 5.090 |
| SRR1811619 | moderate drought stress | 5.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.024 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.805 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.960 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.732 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.571 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.605 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.419 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.137 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.038 |
| SRR2967015 | Control (Tissue:root) | 4.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.514 |
| SRR9715740 | Leave | 5.029 |
| SRR9715741 | Leave | 3.903 |
| SRR9715739 | Root | 0.558 |
| SRR9715742 | Root | 7.930 |
| SRR9715743 | Root | 5.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.504 |
| SRR8749028 | MeJA induced 9h | 25.513 |
| SRR8749029 | MeJA induced 9h | 9.881 |
| SRR8749030 | Uninduced | 6.622 |
| SRR8749031 | Uninduced | 1.884 |
| SRR8749032 | Uninduced | 2.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.963 |
| SRR8400027 | Control-Root | 7.932 |