Gene detail information of Glyur000095s00007066.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35960.1 | 5.00E-133 | Protein kinase family protein |
| NR | CAT79821.1 | 0 | Rop-interacting receptor-like cytoplasmic kinase 2 [Medicago truncatula] |
| COG | NP_578384.1 | 8.00E-23 | serine/threonine-protein kinase [Pyrococcus furiosus DSM 3638] |
| Swissprot | tr|Q8RXC8|RBK2_ARATH | 1.00E-131 | Receptor-like cytosolic serine/threonine-protein kinase RBK2 |
| trEMBL | tr|C1L343|C1L343_MEDTR | 0 | Rop-interacting receptor-like cytoplasmic kinase 2 {ECO:0000313|EMBL:CAT79821.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00095 | 317901 | 321179 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.10.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000095s00007066.1 | PF00069.20 | Pkinase | 125 | 326 | 1.30E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.662 |
| SRR1783600 | control | 1.689 |
| SRR1783602 | moderate drought stress | 2.850 |
| SRR1811619 | moderate drought stress | 2.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.918 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.693 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.506 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.464 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.157 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.205 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.013 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.777 |
| SRR2967015 | Control (Tissue:root) | 19.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 44.013 |
| SRR9715740 | Leave | 59.756 |
| SRR9715741 | Leave | 46.871 |
| SRR9715739 | Root | 1.002 |
| SRR9715742 | Root | 5.391 |
| SRR9715743 | Root | 3.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.521 |
| SRR8749028 | MeJA induced 9h | 56.858 |
| SRR8749029 | MeJA induced 9h | 15.709 |
| SRR8749030 | Uninduced | 56.428 |
| SRR8749031 | Uninduced | 78.397 |
| SRR8749032 | Uninduced | 39.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.657 |
| SRR8400027 | Control-Root | 7.085 |