Gene detail information of Glyur000096s00005905.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49230.1 | 4.00E-61 | RING/U-box superfamily protein |
| NR | XP_004502903.1 | 2.21E-115 | PREDICTED: RING-H2 finger protein ATL78-like [Cicer arietinum] |
| Swissprot | tr|Q6NQG7|ATL78_ARATH | 6.00E-80 | RING-H2 finger protein ATL78 |
| trEMBL | tr|G7JAX8|G7JAX8_MEDTR | 1.00E-112 | RING-H2 zinc finger protein {ECO:0000313|EMBL:AES72800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 38519 | 39268 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005905.1 | PF13639.1 | zf-RING_2 | 142 | 185 | 3.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.964 |
| SRR1783600 | control | 10.230 |
| SRR1783602 | moderate drought stress | 33.809 |
| SRR1811619 | moderate drought stress | 32.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 72.289 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.818 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.248 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.989 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 76.936 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 75.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.804 |
| SRR2868004 | Drought Stress(Tissue:root) | 64.696 |
| SRR2967015 | Control (Tissue:root) | 64.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 29.301 |
| SRR9715740 | Leave | 25.085 |
| SRR9715741 | Leave | 28.968 |
| SRR9715739 | Root | 19.649 |
| SRR9715742 | Root | 27.731 |
| SRR9715743 | Root | 24.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.036 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.083 |
| SRR8400027 | Control-Root | 6.351 |