Gene detail information of Glyur000096s00005910.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G27740.10carbamoyl phosphate synthetase A
NRXP_003608865.10Carbamoyl-phosphate synthase small chain [Medicago truncatula]
COGYP_001278349.13.00E-150carbamoyl-phosphate synthase small subunit [Roseiflexus sp. RS-1]
Swissprottr|Q9LVW7|CARA_ARATH0Carbamoyl-phosphate synthase small chain, chloroplastic (Precursor)
trEMBLtr|B7FKE2|B7FKE2_MEDTR0Carbamoylphosphate synthase small subunit {ECO:0000313|EMBL:AES91062.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000965722761381-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01956carA, CPA1 EC:6.3.5.5 Pyrimidine metabolism map00240
Alanine, aspartate and glutamate metabolismmap00250


Gene Ontology

biological_process

GO:0006207  'de novo' pyrimidine nucleobase biosynthetic process

GO:0006541  glutamine metabolic process


molecular_function

GO:0004088  carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000096s00005910.3PF00117.23GATase872615.70E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control172.785
SRR1783600control172.820
SRR1783602moderate drought stress265.183
SRR1811619moderate drought stress263.524

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain180.881
DRR006520Root Summer glycyrrhizin high producing strain177.745
DRR006521Root Winter glycyrrhizin high producing strain62.627
DRR006522Root Winter glycyrrhizin high producing strain60.757
DRR006523Root Summer glycyrrhizin low producing strain97.785
DRR006524Root Summer glycyrrhizin low producing strain97.319
DRR006525Leaf Summer glycyrrhizin high producing strain44.090
DRR006526Leaf Summer glycyrrhizin high producing strain44.041

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)120.041
SRR2868004Drought Stress(Tissue:root)103.776
SRR2967015Control (Tissue:root)118.392

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave64.067
SRR9715740Leave68.983
SRR9715741Leave69.453
SRR9715739Root144.365
SRR9715742Root140.971
SRR9715743Root145.352

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h81.008
SRR8749028MeJA induced 9h82.065
SRR8749029MeJA induced 9h66.242
SRR8749030Uninduced41.133
SRR8749031Uninduced20.102
SRR8749032Uninduced32.894

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root180.605
SRR8400027Control-Root149.736

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved