Gene detail information of Glyur000096s00005913.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76890.29.00E-52Duplicated homeodomain-like superfamily protein
NRXP_007137690.11.47E-174hypothetical protein PHAVU_009G147500g [Phaseolus vulgaris]
Swissprottr|Q39117|TGT2_ARATH4.00E-105Trihelix transcription factor GT-2
trEMBLtr|V7AVU4|V7AVU4_PHAVU6.00E-175Uncharacterized protein {ECO:0000313|EMBL:ESW09684.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000966971572536+


Gene family

Gene familysubfamily
Transcription Factors FamilyTrihelix


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding

GO:0003723  RNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000096s00005913.1PF13837.1Myb_DNA-bind_4401285.70E-19
Glyur000096s00005913.1PF13837.1Myb_DNA-bind_43394311.10E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.707
SRR1783600control9.690
SRR1783602moderate drought stress17.291
SRR1811619moderate drought stress17.154

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.319
DRR006520Root Summer glycyrrhizin high producing strain10.175
DRR006521Root Winter glycyrrhizin high producing strain150.706
DRR006522Root Winter glycyrrhizin high producing strain146.613
DRR006523Root Summer glycyrrhizin low producing strain30.341
DRR006524Root Summer glycyrrhizin low producing strain30.078
DRR006525Leaf Summer glycyrrhizin high producing strain11.520
DRR006526Leaf Summer glycyrrhizin high producing strain11.690

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.119
SRR2868004Drought Stress(Tissue:root)29.823
SRR2967015Control (Tissue:root)35.447

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.118
SRR9715740Leave17.162
SRR9715741Leave21.637
SRR9715739Root3.097
SRR9715742Root21.001
SRR9715743Root16.307

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h113.990
SRR8749028MeJA induced 9h321.329
SRR8749029MeJA induced 9h246.015
SRR8749030Uninduced169.923
SRR8749031Uninduced208.779
SRR8749032Uninduced104.927

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.047
SRR8400027Control-Root17.708

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved