Gene detail information of Glyur000096s00005921.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09850.1 | 3.00E-97 | Transcription elongation factor (TFIIS) family protein |
| NR | XP_007137683.1 | 0 | hypothetical protein PHAVU_009G146900g [Phaseolus vulgaris] |
| Swissprot | tr|F4KFC7|MD26C_ARATH | 3.00E-127 | Probable mediator of RNA polymerase II transcription subunit 26c |
| trEMBL | tr|V7AVL1|V7AVL1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09677.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 109591 | 112822 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | IWS1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005921.1 | PF08711.6 | Med26 | 148 | 199 | 3.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.366 |
| SRR1783600 | control | 63.142 |
| SRR1783602 | moderate drought stress | 74.841 |
| SRR1811619 | moderate drought stress | 74.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.722 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 88.837 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 86.287 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 71.356 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 70.490 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.600 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 50.567 |
| SRR2868004 | Drought Stress(Tissue:root) | 69.460 |
| SRR2967015 | Control (Tissue:root) | 74.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 47.198 |
| SRR9715740 | Leave | 40.277 |
| SRR9715741 | Leave | 52.876 |
| SRR9715739 | Root | 22.328 |
| SRR9715742 | Root | 63.917 |
| SRR9715743 | Root | 52.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 111.965 |
| SRR8749028 | MeJA induced 9h | 177.696 |
| SRR8749029 | MeJA induced 9h | 151.269 |
| SRR8749030 | Uninduced | 163.031 |
| SRR8749031 | Uninduced | 115.592 |
| SRR8749032 | Uninduced | 152.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 69.593 |
| SRR8400027 | Control-Root | 76.007 |