Gene detail information of Glyur000096s00005924.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64740.10cellulose synthase 6
NRXP_007159799.10hypothetical protein PHAVU_002G268200g [Phaseolus vulgaris]
COGYP_002489496.12.00E-20cellulose synthase [Arthrobacter chlorophenolicus A6]
Swissprottr|Q94JQ6|CESA6_ARATH0Cellulose synthase A catalytic subunit 6 [UDP-forming]
trEMBLtr|V7CR17|V7CR17_PHAVU0Cellulose synthase {ECO:0000256|RuleBase:RU361116}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00096134478142534+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0016760  cellulose synthase (UDP-forming) activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000096s00005924.2PF14569.1zf-UDP291071.80E-42
Glyur000096s00005924.2PF03552.9Cellulose_synt39711170


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control50.806
SRR1783600control50.938
SRR1783602moderate drought stress36.646
SRR1811619moderate drought stress36.485

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.635
DRR006520Root Summer glycyrrhizin high producing strain36.231
DRR006521Root Winter glycyrrhizin high producing strain15.780
DRR006522Root Winter glycyrrhizin high producing strain15.514
DRR006523Root Summer glycyrrhizin low producing strain54.344
DRR006524Root Summer glycyrrhizin low producing strain53.859
DRR006525Leaf Summer glycyrrhizin high producing strain14.605
DRR006526Leaf Summer glycyrrhizin high producing strain14.538

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)70.615
SRR2868004Drought Stress(Tissue:root)49.900
SRR2967015Control (Tissue:root)40.658

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave97.318
SRR9715740Leave71.173
SRR9715741Leave90.681
SRR9715739Root33.197
SRR9715742Root92.902
SRR9715743Root83.261

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h41.650
SRR8749028MeJA induced 9h82.117
SRR8749029MeJA induced 9h72.836
SRR8749030Uninduced88.610
SRR8749031Uninduced23.857
SRR8749032Uninduced41.689

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root50.678
SRR8400027Control-Root80.592

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved