Gene detail information of Glyur000096s00005926.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36550.12.00E-111ARM repeat superfamily protein
NRXP_004509274.10PREDICTED: U-box domain-containing protein 5-like [Cicer arietinum]
COGYP_001957949.15.00E-11hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|O23225|PUB5_ARATH2.00E-139U-box domain-containing protein 5
trEMBLtr|A0A072TSG5|A0A072TSG5_MEDTR0Ubiquitin-protein ligase {ECO:0000313|EMBL:KEH20429.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00096149270154640+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000096s00005926.2PF04564.10U-box2753443.10E-19
Glyur000096s00005926.2PF05804.7KAP4936652.70E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.138
SRR1783600control11.145
SRR1783602moderate drought stress22.370
SRR1811619moderate drought stress21.771

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.320
DRR006520Root Summer glycyrrhizin high producing strain20.904
DRR006521Root Winter glycyrrhizin high producing strain11.656
DRR006522Root Winter glycyrrhizin high producing strain8.695
DRR006523Root Summer glycyrrhizin low producing strain53.921
DRR006524Root Summer glycyrrhizin low producing strain53.220
DRR006525Leaf Summer glycyrrhizin high producing strain9.179
DRR006526Leaf Summer glycyrrhizin high producing strain8.445

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.182
SRR2868004Drought Stress(Tissue:root)19.977
SRR2967015Control (Tissue:root)20.773

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.889
SRR9715740Leave12.192
SRR9715741Leave13.356
SRR9715739Root2.371
SRR9715742Root19.178
SRR9715743Root16.501

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.651
SRR8749028MeJA induced 9h7.438
SRR8749029MeJA induced 9h3.822
SRR8749030Uninduced8.830
SRR8749031Uninduced6.296
SRR8749032Uninduced5.900

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.802
SRR8400027Control-Root22.510

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved