Gene detail information of Glyur000096s00005929.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G18280.22.00E-69tubby like protein 2
NRXP_010095256.14.47E-167Tubby-like F-box protein 5 [Morus notabilis]
Swissprottr|Q6Z2G9|TLP5_ORYSJ7.00E-91Tubby-like F-box protein 5
trEMBLtr|W9RLQ5|W9RLQ5_9ROSA2.00E-167Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00096157284162055-


Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000096s00005929.1PF00646.28F-box541059.60E-09
Glyur000096s00005929.1PF01167.13Tub2664822.50E-71


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.426
SRR1783600control24.778
SRR1783602moderate drought stress25.512
SRR1811619moderate drought stress25.739

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.056
DRR006520Root Summer glycyrrhizin high producing strain20.503
DRR006521Root Winter glycyrrhizin high producing strain17.304
DRR006522Root Winter glycyrrhizin high producing strain17.021
DRR006523Root Summer glycyrrhizin low producing strain29.228
DRR006524Root Summer glycyrrhizin low producing strain28.850
DRR006525Leaf Summer glycyrrhizin high producing strain9.972
DRR006526Leaf Summer glycyrrhizin high producing strain9.747

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.309
SRR2868004Drought Stress(Tissue:root)35.849
SRR2967015Control (Tissue:root)34.758

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.373
SRR9715740Leave19.617
SRR9715741Leave20.396
SRR9715739Root8.269
SRR9715742Root15.220
SRR9715743Root13.640

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.214
SRR8749028MeJA induced 9h21.655
SRR8749029MeJA induced 9h24.572
SRR8749030Uninduced29.772
SRR8749031Uninduced21.007
SRR8749032Uninduced21.323

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.773
SRR8400027Control-Root27.779

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved