Gene detail

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Gene detail information of Glyur000097s00008289.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71980.1	1.00E-85	Protease-associated (PA) RING/U-box zinc finger family protein
NR	XP_003556191.2	0	PREDICTED: E3 ubiquitin-protein ligase RNF13-like [Glycine max]
Swissprot	tr\|Q8VZ14\|RMR2_ARATH	1.00E-121	Receptor homology region, transmembrane domain- and RING domain-containing protein 2 (Precursor)
trEMBL	tr\|I1LD86\|I1LD86_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G36160.1}

Sequence

Transcript Sequence

>Glyur000097s00008289.1
ATGGGTACCTCGAATCTTCGCTTGTTTTTCTTCTCTCTGGCGAGTTTGTGTGCTATGGCGGCTGCCAAGGTTTTTTTGATTGGGAACAATATCACTCTCTCATTCGATGATATCGTTTTTTTTTTCGTCAAAGGGTCTGGTGAATATGGGGTCTTATTTTTGGCTGAGCCACTTGATGCCTTTGAGGAAAAGGTTAGAAGGGCACAAAATGCTGGCTACAAAGCTGCAATTGTCTATGACAACGAAGATGGCGGCTTTTTTTTTGCAATGGCAGGAATTTTTTTTGGTATAAGAATACATGCTGTATTTGTATCAAAAGCTTTTTTTTTATTACTAAAGAAATACACTGGTTTGACTAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGTTTTTTTATTTATTTCCCTACTAGCTATGTCTGCTGTGCTGGCCATTTTTTTCTTCGTCCGTAGGCATCGCATAAGAAGAGAAAGGCCTCTTTTTTTTCGTGTTCGTGAGTTCCACGGTATGAGTAGTCGCTTAGTTTTTTTAATGCCGAGTTTGATATTTACTGCTGTCTTGGAAGATATTTTTTTATCAAGAACATGTGCTATCTGCCTCGAAGACTATTGTGTTTTTTTGAAGCTTAGGATTCTGCCCTGCTGTCACATTTTTTTTGCTGCCTGTGTGGATTCTTGGCTCACATCATGGAGAACTTTTTGTCCAGTTTGCAAGCGCGATGCAAGAACGGGCTTGACTGTTTTTTTACCTTCAGAATCCACACCTTTGCTTGCATCAAGCCCGGTTTTTTTGGCATCCTCTGTTTTATCATCTGTGAGGTCATCATTTGTTTTTTTCTCGGCAATACGAATTTCTCGGCCACCTTCACAGTCCCTTTTTTTTTCTCGTAACCACTCTTTGGCTAGCACCCCTTGTGTTCTGCCGTCTCTTAGGTCCTACCATCAATCCCCCTCCCTGAGCGTCATTTTTTTCTCTGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCCCACATGAATTCACCACATTCCATGGGTTACCCGTCTATGTTTTTTTTTAACTCAAGGTACTTCTCTTCTCATATTCCAAGTCCAATTTTTTTTTCGGTAAGTTACATTGGTTCATCCAGTCACCAACAGCTTTTTTTCCGTTATAGTGAGTCAGCCGCGAGCTTCTCACCATTTGTTTTTTTAAACTCCCTTCCGGAATGTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	19698	22991	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008289.1	PF02225.17	PA	60	115	4.90E-06
Glyur000097s00008289.1	PF13639.1	zf-RING_2	203	246	2.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.519
SRR1783600	control	12.370
SRR1783602	moderate drought stress	12.879
SRR1811619	moderate drought stress	12.810

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.849
DRR006520	Root Summer glycyrrhizin high producing strain	4.528
DRR006521	Root Winter glycyrrhizin high producing strain	6.972
DRR006522	Root Winter glycyrrhizin high producing strain	7.761
DRR006523	Root Summer glycyrrhizin low producing strain	3.176
DRR006524	Root Summer glycyrrhizin low producing strain	3.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.199
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.040

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.101
SRR2868004	Drought Stress(Tissue:root)	0.218
SRR2967015	Control (Tissue:root)	0.186

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.581
SRR9715740	Leave	2.100
SRR9715741	Leave	1.332
SRR9715739	Root	1.758
SRR9715742	Root	0.919
SRR9715743	Root	0.912

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.029
SRR8749028	MeJA induced 9h	0.214
SRR8749029	MeJA induced 9h	0.098
SRR8749030	Uninduced	0.026
SRR8749031	Uninduced	0.031
SRR8749032	Uninduced	0.077

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.057
SRR8400027	Control-Root	1.269