Gene detail information of Glyur000097s00008290.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G35620.1 | 1.00E-139 | PDI-like 5-2 |
| NR | ACU19398.1 | 0 | unknown [Glycine max] |
| COG | YP_007056476.1 | 3.00E-13 | thioredoxin [Rivularia sp. PCC 7116] |
| Swissprot | tr|Q94F09|PDI52_ARATH | 0 | Protein disulfide-isomerase 5-2 (Precursor) |
| trEMBL | tr|C6TC46|C6TC46_SOYBN | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU19398.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00097 | 26369 | 30101 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09580 | PDIA1, P4HB | EC:5.3.4.1 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000097s00008290.1 | PF00085.15 | Thioredoxin | 43 | 145 | 3.30E-26 |
| Glyur000097s00008290.1 | PF13848.1 | Thioredoxin_6 | 203 | 359 | 5.50E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.712 |
| SRR1783600 | control | 27.881 |
| SRR1783602 | moderate drought stress | 21.137 |
| SRR1811619 | moderate drought stress | 20.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.584 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.618 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.033 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.859 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.576 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.838 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 58.310 |
| SRR2868004 | Drought Stress(Tissue:root) | 51.428 |
| SRR2967015 | Control (Tissue:root) | 49.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.940 |
| SRR9715740 | Leave | 14.965 |
| SRR9715741 | Leave | 16.527 |
| SRR9715739 | Root | 3.656 |
| SRR9715742 | Root | 20.317 |
| SRR9715743 | Root | 18.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.170 |
| SRR8749028 | MeJA induced 9h | 53.200 |
| SRR8749029 | MeJA induced 9h | 46.235 |
| SRR8749030 | Uninduced | 30.132 |
| SRR8749031 | Uninduced | 30.363 |
| SRR8749032 | Uninduced | 21.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 63.733 |
| SRR8400027 | Control-Root | 57.894 |