Gene detail information of Glyur000097s00008311.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24870.2 | 6.00E-89 | RING/U-box superfamily protein |
| NR | XP_003549202.1 | 0 | PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Glycine max] |
| Swissprot | tr|Q7XTV7|HIP1_ORYSJ | 7.00E-39 | Probable E3 ubiquitin-protein ligase HIP1 |
| trEMBL | tr|K7MMR0|K7MMR0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G29272.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00097 | 168795 | 174365 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000097s00008311.1 | PF13639.1 | zf-RING_2 | 474 | 516 | 7.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.167 |
| SRR1783600 | control | 9.472 |
| SRR1783602 | moderate drought stress | 12.180 |
| SRR1811619 | moderate drought stress | 12.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.147 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.837 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.787 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.024 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.093 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.128 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.957 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 61.889 |
| SRR2868004 | Drought Stress(Tissue:root) | 73.373 |
| SRR2967015 | Control (Tissue:root) | 58.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 31.056 |
| SRR9715740 | Leave | 34.178 |
| SRR9715741 | Leave | 42.120 |
| SRR9715739 | Root | 22.205 |
| SRR9715742 | Root | 25.419 |
| SRR9715743 | Root | 25.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.021 |
| SRR8749028 | MeJA induced 9h | 36.342 |
| SRR8749029 | MeJA induced 9h | 39.344 |
| SRR8749030 | Uninduced | 47.722 |
| SRR8749031 | Uninduced | 74.964 |
| SRR8749032 | Uninduced | 85.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 47.134 |
| SRR8400027 | Control-Root | 38.955 |