Gene detail information of Glyur000097s00008342.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16130.10arabinose kinase
NRXP_004498554.10PREDICTED: L-arabinokinase-like [Cicer arietinum]
COGYP_003323924.14.00E-123GHMP kinase [Thermobaculum terrenum ATCC BAA-798]
Swissprottr|O23461|ARAK_ARATH0L-arabinokinase
trEMBLtr|G7I565|G7I565_MEDTR0Arabinose kinase-like protein {ECO:0000313|EMBL:AES58866.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00097321296335257-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12446E2.7.1.46 EC:2.7.1.46 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0008152  metabolic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0005524  ATP binding

GO:0016301  kinase activity

GO:0016773  phosphotransferase activity, alcohol group as acceptor

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000097s00008342.1PF13528.1Glyco_trans_1_3211479.90E-12
Glyur000097s00008342.1PF10509.4GalKase_gal_bdg4865302.00E-05
Glyur000097s00008342.1PF00288.21GHMP_kinases_N6306951.70E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.559
SRR1783600control4.458
SRR1783602moderate drought stress9.601
SRR1811619moderate drought stress9.549

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.355
DRR006520Root Summer glycyrrhizin high producing strain9.480
DRR006521Root Winter glycyrrhizin high producing strain6.344
DRR006522Root Winter glycyrrhizin high producing strain6.243
DRR006523Root Summer glycyrrhizin low producing strain12.717
DRR006524Root Summer glycyrrhizin low producing strain12.749
DRR006525Leaf Summer glycyrrhizin high producing strain7.516
DRR006526Leaf Summer glycyrrhizin high producing strain7.525

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.276
SRR2868004Drought Stress(Tissue:root)40.262
SRR2967015Control (Tissue:root)55.665

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.838
SRR9715740Leave19.510
SRR9715741Leave26.391
SRR9715739Root4.581
SRR9715742Root21.922
SRR9715743Root18.353

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.458
SRR8749028MeJA induced 9h25.815
SRR8749029MeJA induced 9h9.477
SRR8749030Uninduced20.523
SRR8749031Uninduced24.149
SRR8749032Uninduced20.273

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.090
SRR8400027Control-Root19.997

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved