Gene detail information of Glyur000097s00008345.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80290.2 | 3.00E-90 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_004498553.1 | 0 | PREDICTED: exostosin-like 3-like [Cicer arietinum] |
| Swissprot | tr|Q9C975|GT643_ARATH | 4.00E-117 | Glycosyltransferase family protein 64 C3 {ECO:0000303|PubMed:24905498} (Precursor) |
| trEMBL | tr|G7I564|G7I564_MEDTR | 4.00E-167 | Nucleotide-diphospho-sugar transferase-like protein {ECO:0000313|EMBL:AES58865.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00097 | 339051 | 341042 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT64 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000097s00008345.1 | PF09258.5 | Glyco_transf_64 | 44 | 307 | 3.60E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.102 |
| SRR1783600 | control | 3.297 |
| SRR1783602 | moderate drought stress | 2.026 |
| SRR1811619 | moderate drought stress | 2.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.929 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.845 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.794 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.810 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.088 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.832 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.028 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.407 |
| SRR2967015 | Control (Tissue:root) | 6.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.587 |
| SRR9715740 | Leave | 2.629 |
| SRR9715741 | Leave | 2.006 |
| SRR9715739 | Root | 7.876 |
| SRR9715742 | Root | 6.230 |
| SRR9715743 | Root | 6.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.191 |
| SRR8749028 | MeJA induced 9h | 15.098 |
| SRR8749029 | MeJA induced 9h | 5.085 |
| SRR8749030 | Uninduced | 1.220 |
| SRR8749031 | Uninduced | 0.466 |
| SRR8749032 | Uninduced | 0.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.739 |
| SRR8400027 | Control-Root | 5.895 |