Gene detail information of Glyur000098s00007964.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57655.20xylose isomerase family protein
NRXP_007154797.10hypothetical protein PHAVU_003G148700g [Phaseolus vulgaris]
COGYP_004267657.10D-xylose isomerase [Planctomyces brasiliensis DSM 5305]
Swissprottr|Q9FKK7|XYLA_ARATH0Xylose isomerase
trEMBLtr|V7CD28|V7CD28_PHAVU0Xylose isomerase {ECO:0000256|RuleBase:RU000609}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000981276818929-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01805xylA EC:5.3.1.5 Pentose and glucuronate interconversions map00040
Fructose and mannose metabolismmap00051


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0009045  xylose isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000098s00007964.3PF01261.19AP_endonuc_21303539.00E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control56.966
SRR1783600control56.624
SRR1783602moderate drought stress69.726
SRR1811619moderate drought stress70.158

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain105.235
DRR006520Root Summer glycyrrhizin high producing strain106.065
DRR006521Root Winter glycyrrhizin high producing strain119.929
DRR006522Root Winter glycyrrhizin high producing strain116.597
DRR006523Root Summer glycyrrhizin low producing strain123.021
DRR006524Root Summer glycyrrhizin low producing strain123.450
DRR006525Leaf Summer glycyrrhizin high producing strain46.294
DRR006526Leaf Summer glycyrrhizin high producing strain45.957

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.193
SRR2868004Drought Stress(Tissue:root)78.238
SRR2967015Control (Tissue:root)108.548

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave84.924
SRR9715740Leave69.704
SRR9715741Leave78.899
SRR9715739Root22.847
SRR9715742Root74.836
SRR9715743Root61.298

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h81.511
SRR8749028MeJA induced 9h106.392
SRR8749029MeJA induced 9h77.692
SRR8749030Uninduced132.155
SRR8749031Uninduced67.370
SRR8749032Uninduced87.410

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.856
SRR8400027Control-Root60.275

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved