Gene detail information of Glyur000098s00007980.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25810.11.00E-92xyloglucan endotransglycosylase 6
NRKHN22712.11.17E-129Putative xyloglucan endotransglucosylase/hydrolase protein 23 [Glycine soja]
COGYP_004641534.15.00E-16beta-glucanase [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q38910|XTH23_ARATH9.00E-116Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBLtr|I1MSS9|I1MSS9_SOYBN9.00E-130Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000988497185933+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000098s00007980.1PF00722.16Glyco_hydro_16232039.30E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.137
SRR1783600control3.179
SRR1783602moderate drought stress3.277
SRR1811619moderate drought stress3.364

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain152.016
DRR006520Root Summer glycyrrhizin high producing strain149.884
DRR006521Root Winter glycyrrhizin high producing strain0.298
DRR006522Root Winter glycyrrhizin high producing strain0.457
DRR006523Root Summer glycyrrhizin low producing strain256.422
DRR006524Root Summer glycyrrhizin low producing strain256.135
DRR006525Leaf Summer glycyrrhizin high producing strain1.121
DRR006526Leaf Summer glycyrrhizin high producing strain1.319

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)51.490
SRR2868004Drought Stress(Tissue:root)68.388
SRR2967015Control (Tissue:root)125.537

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.232
SRR9715740Leave39.019
SRR9715741Leave32.006
SRR9715739Root556.643
SRR9715742Root572.443
SRR9715743Root523.112

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h526.850
SRR8749028MeJA induced 9h569.649
SRR8749029MeJA induced 9h632.678
SRR8749030Uninduced718.676
SRR8749031Uninduced244.878
SRR8749032Uninduced663.756

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.621
SRR8400027Control-Root128.595

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved