Gene detail information of Glyur000098s00007983.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25810.15.00E-122xyloglucan endotransglycosylase 6
NRXP_008799495.10PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
COGYP_004641534.11.00E-15beta-glucanase [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q38910|XTH23_ARATH2.00E-150Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBLtr|V7CBQ5|V7CBQ5_PHAVU9.00E-168Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00098103495117710-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16
EAR motif-containing Proteinsother


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000098s00007983.2PF00722.16Glyco_hydro_16272063.30E-60
Glyur000098s00007983.2PF06955.7XET_C2422887.00E-22
Glyur000098s00007983.2PF00722.16Glyco_hydro_164214649.40E-10
Glyur000098s00007983.2PF00722.16Glyco_hydro_165427215.30E-62
Glyur000098s00007983.2PF06955.7XET_C7568027.20E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.838
SRR1783600control16.181
SRR1783602moderate drought stress23.870
SRR1811619moderate drought stress23.341

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain237.273
DRR006520Root Summer glycyrrhizin high producing strain235.464
DRR006521Root Winter glycyrrhizin high producing strain22.690
DRR006522Root Winter glycyrrhizin high producing strain22.271
DRR006523Root Summer glycyrrhizin low producing strain700.806
DRR006524Root Summer glycyrrhizin low producing strain699.627
DRR006525Leaf Summer glycyrrhizin high producing strain16.240
DRR006526Leaf Summer glycyrrhizin high producing strain15.913

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)73.013
SRR2868004Drought Stress(Tissue:root)117.530
SRR2967015Control (Tissue:root)275.554

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave216.846
SRR9715740Leave210.081
SRR9715741Leave199.473
SRR9715739Root460.557
SRR9715742Root726.715
SRR9715743Root639.833

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1146.936
SRR8749028MeJA induced 9h1397.365
SRR8749029MeJA induced 9h2075.576
SRR8749030Uninduced2505.664
SRR8749031Uninduced1402.151
SRR8749032Uninduced1639.896

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.577
SRR8400027Control-Root177.490

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved