Gene detail information of Glyur000098s00007986.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25810.11.00E-115xyloglucan endotransglycosylase 6
NRXP_003542150.10PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like [Glycine max]
COGYP_004641534.13.00E-19beta-glucanase [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q38910|XTH23_ARATH3.00E-151Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBLtr|I1LVS8|I1LVS8_SOYBN0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00098120911122275+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000098s00007986.1PF00722.16Glyco_hydro_16342121.60E-62
Glyur000098s00007986.1PF06955.7XET_C2372888.20E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.809
SRR1783600control7.823
SRR1783602moderate drought stress6.066
SRR1811619moderate drought stress5.916

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain112.722
DRR006520Root Summer glycyrrhizin high producing strain111.973
DRR006521Root Winter glycyrrhizin high producing strain32.727
DRR006522Root Winter glycyrrhizin high producing strain32.239
DRR006523Root Summer glycyrrhizin low producing strain206.145
DRR006524Root Summer glycyrrhizin low producing strain206.834
DRR006525Leaf Summer glycyrrhizin high producing strain1.257
DRR006526Leaf Summer glycyrrhizin high producing strain1.251

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.438
SRR2868004Drought Stress(Tissue:root)62.341
SRR2967015Control (Tissue:root)31.564

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.204
SRR9715740Leave6.754
SRR9715741Leave5.084
SRR9715739Root17.787
SRR9715742Root74.763
SRR9715743Root56.569

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h856.531
SRR8749028MeJA induced 9h1345.539
SRR8749029MeJA induced 9h1996.235
SRR8749030Uninduced1246.222
SRR8749031Uninduced1324.172
SRR8749032Uninduced2163.617

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.661
SRR8400027Control-Root16.864

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved