Gene detail information of Glyur000098s00007989.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51680.3 | 4.00E-117 | 4-coumarate:CoA ligase 1 |
| NR | AID51448.1 | 0 | 4-coumaroyl:CoA-ligase [Astragalus membranaceus] |
| COG | YP_003104397.1 | 6.00E-62 | AMP-dependent synthetase and ligase [Actinosynnema mirum DSM 43827] |
| Swissprot | tr|O24145|4CL1_TOBAC | 8.00E-152 | 4-coumarate--CoA ligase 1 |
| trEMBL | tr|A0A075EAU5|A0A075EAU5_ASTME | 0 | 4-coumaroyl:CoA-ligase {ECO:0000313|EMBL:AID51448.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00098 | 166759 | 172907 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000098s00007989.1 | PF00501.23 | AMP-binding | 36 | 324 | 1.30E-59 |
| Glyur000098s00007989.1 | PF13193.1 | AMP-binding_C | 343 | 418 | 1.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.534 |
| SRR1783600 | control | 33.929 |
| SRR1783602 | moderate drought stress | 30.024 |
| SRR1811619 | moderate drought stress | 29.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.986 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.347 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.069 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.067 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.823 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.428 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 42.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 102.697 |
| SRR2868004 | Drought Stress(Tissue:root) | 239.148 |
| SRR2967015 | Control (Tissue:root) | 77.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 154.744 |
| SRR9715740 | Leave | 252.568 |
| SRR9715741 | Leave | 242.248 |
| SRR9715739 | Root | 74.657 |
| SRR9715742 | Root | 103.150 |
| SRR9715743 | Root | 95.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.973 |
| SRR8749028 | MeJA induced 9h | 17.367 |
| SRR8749029 | MeJA induced 9h | 7.403 |
| SRR8749030 | Uninduced | 8.900 |
| SRR8749031 | Uninduced | 0.506 |
| SRR8749032 | Uninduced | 0.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 113.159 |
| SRR8400027 | Control-Root | 78.115 |