Gene detail information of Glyur000098s00008004.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18850.1 | 5.00E-167 | SET domain-containing protein |
| NR | XP_003550657.1 | 0 | PREDICTED: uncharacterized protein LOC100778605 [Glycine max] |
| Swissprot | tr|Q9XI84|RBCMT_ARATH | 2.00E-14 | [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic (Precursor) |
| trEMBL | tr|I1MSR3|I1MSR3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G07110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00098 | 233681 | 241148 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000098s00008004.1 | PF00856.23 | SET | 173 | 380 | 1.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.400 |
| SRR1783600 | control | 8.417 |
| SRR1783602 | moderate drought stress | 10.421 |
| SRR1811619 | moderate drought stress | 10.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.956 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.796 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.667 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.639 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.598 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.798 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.731 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.744 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.914 |
| SRR2967015 | Control (Tissue:root) | 7.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.998 |
| SRR9715740 | Leave | 11.203 |
| SRR9715741 | Leave | 9.104 |
| SRR9715739 | Root | 2.485 |
| SRR9715742 | Root | 6.518 |
| SRR9715743 | Root | 5.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.372 |
| SRR8749028 | MeJA induced 9h | 12.910 |
| SRR8749029 | MeJA induced 9h | 8.136 |
| SRR8749030 | Uninduced | 2.808 |
| SRR8749031 | Uninduced | 1.480 |
| SRR8749032 | Uninduced | 1.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.270 |
| SRR8400027 | Control-Root | 11.569 |