Gene detail

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Gene detail information of Glyur000098s00008014.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57420.1	2.00E-44	indole-3-acetic acid inducible 33
NR	XP_007154763.1	9.17E-81	hypothetical protein PHAVU_003G145600g [Phaseolus vulgaris]
Swissprot	tr\|Q9FKM7\|IAA33_ARATH	3.00E-56	Auxin-responsive protein IAA33
trEMBL	tr\|V7C9A6\|V7C9A6_PHAVU	3.00E-81	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000098s00008014.1
CATTAAATGGTCTTGAAAAAGGAAAACTAATTAAGCCACGAGACTGGGGTCGATTCTAAACACCTATCTGACAACTCCCGACATTTGTGCTATATATCTCTCTCTCACACACACACTCACATATCTATATGTATATTTTCATTTCTCAACAAAAAAACTTGATCAAATACATGCACCATCAAACATAGTACCCCAGGAAACCCCACAAGGTTTCAGATTTTCGATCACCACCCTCTTTATGATCTTAACTTTTACCAAACTCCATTCAAGTTAACCCCTTTTCAGTTTTCGATCCATTTCTATCAGATTCAGACATAAAATTAAAGACCTTAATTTCTTCCCCCTCCCACCCCATGCTGCATAACACACACATCTTCTTCTCATCATCACGATGAACAGTTTTGACCCACAAAGACAAGATTCATTGAAAAGACAAAGATGGCAAGATAGAAGACAGATCATGCAGCAGGGTGCACCATCAAATTCTTCTTCTTCTTCTTTGGCTTTCTATGGCAATAATAATAAGAACAAACTCCAAGGCTTTCCTGGGCTCGAGGATGATGACTTGGTGTCCAGTGTTGTCCCTGCAGTGACGGTTGTGTTGGAGGGTCGTTCCATCTGCCAACGCATCAGCCTCCATAAACATGGTAGCTACCAAAGTTTCGCCAAGGCTCTCCGGCAGATGTTCGTGGACGGAGGCACCGCCGACTCGGAGATCGGTGATGATCTTGATCTCTCTAATGCCATTCCCGGTCACCTTATTGCCTATGAAGACATGGAGAATGATCTCCTTCTTGCTGGTGACCTTAGCTGGAAGGATTTTGTACGTGTGGCAAAGAGAATTCGGATACTTCCGGCCAAGGGGAACTCAAGGAATGGTGCAGCAAGTACAAGAGGGGCATAAGCGATATATCATCACACCTGAACATGGTTAATCATAATTTTGGGGATGTTTTGTGCTTTTAGAGAGAGTAGAAACTACAATAAAATAAAATATATTGTATTAATATGTGGCTTAGAAAATGTGTTTTATTTAGATGGTCCGGAATGAGCGATAACGCTAGCTAGCAAGAAATTAATGCTGGTTATGAGTTAATCCAATTGGAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00098	288647	290647	-

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0046983 protein dimerization activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000098s00008014.1	PF02309.11	AUX_IAA	42	157	1.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.857
SRR1783600	control	0.857
SRR1783602	moderate drought stress	1.922
SRR1811619	moderate drought stress	1.849

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.307
DRR006520	Root Summer glycyrrhizin high producing strain	10.931
DRR006521	Root Winter glycyrrhizin high producing strain	0.547
DRR006522	Root Winter glycyrrhizin high producing strain	0.587
DRR006523	Root Summer glycyrrhizin low producing strain	7.276
DRR006524	Root Summer glycyrrhizin low producing strain	7.240
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.596
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.575

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.972
SRR2868004	Drought Stress(Tissue:root)	1.158
SRR2967015	Control (Tissue:root)	1.462

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.750
SRR9715740	Leave	2.651
SRR9715741	Leave	1.779
SRR9715739	Root	0.000
SRR9715742	Root	1.080
SRR9715743	Root	1.653

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.096
SRR8749028	MeJA induced 9h	0.179
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.100
SRR8400027	Control-Root	0.339