Gene detail

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Gene detail information of Glyur000099s00014930.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32640.1	8.00E-46	Basic helix-loop-helix (bHLH) DNA-binding family protein
NR	KEH18600.1	0	basic helix loop helix (bHLH) family transcription factor [Medicago truncatula]
Swissprot	tr\|O49687\|MYC4_ARATH	2.00E-86	Transcription factor MYC4
trEMBL	tr\|A0A072TYH1\|A0A072TYH1_MEDTR	0	Basic helix loop helix (BHLH) family transcription factor {ECO:0000313\|EMBL:KEH18600.1}

Sequence

Transcript Sequence

>Glyur000099s00014930.1
ATGGAAGACTTGATCATCTCTCCTTCTTCATCCTCCTCTTTGGTCTCTCTACCACACCAAGTAAACCCAACACCAACACCAACCCTTCAGCAAAAGCTTCAATTTTTACTCCAAAGCCAGCCCGATTGGTGGGTCTATGGCATCTTCTGGCAAACCACAAAGGACGAGAAAGGCAACCTCTGCTTAACCTGGGGCGAAGGCCATTTCCAAGGCACCAAGGAAACTCACCGCACCATCATCAAACCCCACCACCCCATTTCCACGGAGCGAAGGTCCAAGTTCAACGCAAACGACACTGACACGTGCTCAAACGGCGATGCTGAGTGGTTCTACGTCATGTCGTTGACTCGCACCTTCTCCATCGGCAATAGTGCCTCCTCCACTTCCTCTTCTTCTCTCCCCGGCAAGGCTTTCGCTTTGGGCTCTGTTCTGTGGCTGAACAGCAAGCACGAGCTTCAATTCTACAACTGCGAGAGGTCCAACGAGGCACACGTGCACGGGATTCAAACCCTGATCTGCATCCCAACCACAAACGGCGTCATCGAAATGGGTTCCTACGACAACATCAAACAGAACTGGCCCCTCGTCCACCACGCCAAGTCCATGTTCTGTTCCTCCCCCTCCTCAGATCTCAACAACCTCAGCACCACCCCAACCGGCACCCAAATCTTCGACCACAACAACAACAACAACAACAGCATCTCCTTCGCCGACACCGGCATCATCTCCGGCGTCGTCCAAGACAACAAGAAGAATACCATCGTGTCCTGTTATGTCGATTCCGAACACTCCGACTCCGATTGTCCAACACTATTACCAACACCAACAACAACAACNACGACGACGACAACAAACGGTTCGTTTGAGAAAAGGGAACCGAAGAAGAGAGGGAGGAAACCGTTAACGGGGCGTGAAACCCCCGTTAACCACGTGGAGGCAGAGAGACAGAGGAGGGAGAAGCTGAACCATCGCTTCTACGCTCTGCGTGCTGTGGTTCCCAACGTTTCGAGGATGGACAAGGCTTCTCTGTTATCCGATGCGGTGGCTTACATCAACGAGCTCAAGGGAAAGATCGATGAGTTGGAATCGCAGCAACAGAGGGGTAATAAAAAGGTGAAGTTGGAAATGATGGATAATAACATGGATAACCAGAGTACAACGACAACGACGACGACTTCAACTGTGGTGGACCAATTAACGAGGCCACTTGTTTGTTGTGCGCTGGAGATTGATGTGAAGATTATTGGGCCTGATGCTATGGTGAGGGTTCAATCGGAGAATGTGAACCACCCTGGGGCGAGGCTAATGGGTGCATTGAGGGATTTGGAGTTTCAGGTACACCATGCTAGTATGTCTTGTGTTAATGACCTTATGGTTCAAGATGTTGTTGTTAAGATCCCTAATGGGATGAGAAGCAGTGAAGAGGGTCTTAGATCTGCAATTCTCATGAGACTGGATCAGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00099	79685	81148	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000099s00014930.1	PF14215.1	bHLH-MYC_N	29	203	2.20E-41
Glyur000099s00014930.1	PF00010.21	HLH	309	354	7.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.024
SRR1783600	control	47.721
SRR1783602	moderate drought stress	109.414
SRR1811619	moderate drought stress	127.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.782
DRR006520	Root Summer glycyrrhizin high producing strain	28.755
DRR006521	Root Winter glycyrrhizin high producing strain	0.495
DRR006522	Root Winter glycyrrhizin high producing strain	0.557
DRR006523	Root Summer glycyrrhizin low producing strain	3.115
DRR006524	Root Summer glycyrrhizin low producing strain	2.938
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.159
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.446

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.738
SRR2868004	Drought Stress(Tissue:root)	10.646
SRR2967015	Control (Tissue:root)	12.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	22.367
SRR9715740	Leave	22.508
SRR9715741	Leave	28.615
SRR9715739	Root	21.695
SRR9715742	Root	18.604
SRR9715743	Root	19.582

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.194
SRR8749028	MeJA induced 9h	0.583
SRR8749029	MeJA induced 9h	0.472
SRR8749030	Uninduced	1.357
SRR8749031	Uninduced	0.705
SRR8749032	Uninduced	2.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.380
SRR8400027	Control-Root	2.616