Gene detail information of Glyur000099s00014945.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46660.1 | 0 | cytochrome P450, family 78, subfamily A, polypeptide 6 |
| NR | XP_003627517.1 | 0 | Cytochrome P450 78A3 [Medicago truncatula] |
| COG | YP_007204762.1 | 2.00E-26 | cytochrome P450 [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|O48927|C78A3_SOYBN | 0 | Cytochrome P450 78A3 |
| trEMBL | tr|Q2MJ07|Q2MJ07_MEDTR | 0 | Cytochrome P450 monooxygenase CYP78A29 {ECO:0000313|EMBL:ABC59089.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00099 | 171344 | 173671 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP78A6 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000099s00014945.1 | PF00067.17 | p450 | 95 | 534 | 1.60E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.975 |
| SRR1783600 | control | 42.013 |
| SRR1783602 | moderate drought stress | 86.428 |
| SRR1811619 | moderate drought stress | 86.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.606 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.767 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.279 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.749 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.817 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.755 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.243 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.843 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.635 |
| SRR2967015 | Control (Tissue:root) | 16.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.526 |
| SRR9715740 | Leave | 7.946 |
| SRR9715741 | Leave | 6.834 |
| SRR9715739 | Root | 38.641 |
| SRR9715742 | Root | 62.407 |
| SRR9715743 | Root | 50.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.574 |
| SRR8749028 | MeJA induced 9h | 2.739 |
| SRR8749029 | MeJA induced 9h | 0.905 |
| SRR8749030 | Uninduced | 1.999 |
| SRR8749031 | Uninduced | 0.560 |
| SRR8749032 | Uninduced | 0.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.436 |
| SRR8400027 | Control-Root | 48.117 |