Gene detail information of Glyur000099s00014956.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39980.103-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1
NRXP_011031057.10PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Populus euphratica]
COGYP_002297191.11.00E-1783-deoxy-7-phosphoheptulonate synthase [Rhodospirillum centenum SW]
Swissprottr|P27608|AROF_TOBAC0Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor)
trEMBLtr|F6HJL1|F6HJL1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB52555.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00099230691236711+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01626E2.5.1.54, aroF, aroG, aroH EC:2.5.1.54 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process


molecular_function

GO:0003849  3-deoxy-7-phosphoheptulonate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000099s00014956.1PF01474.11DAHP_synth_2323902.00E-147
Glyur000099s00014956.1PF01474.11DAHP_synth_23914321.10E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.157
SRR1783600control8.053
SRR1783602moderate drought stress6.440
SRR1811619moderate drought stress6.299

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.245
DRR006520Root Summer glycyrrhizin high producing strain2.157
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain2.020
DRR006524Root Summer glycyrrhizin low producing strain2.050
DRR006525Leaf Summer glycyrrhizin high producing strain13.778
DRR006526Leaf Summer glycyrrhizin high producing strain13.629

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.842
SRR2868004Drought Stress(Tissue:root)65.091
SRR2967015Control (Tissue:root)59.282

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.645
SRR9715740Leave2.315
SRR9715741Leave6.695
SRR9715739Root27.706
SRR9715742Root19.828
SRR9715743Root21.496

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.944
SRR8749028MeJA induced 9h51.615
SRR8749029MeJA induced 9h6.071
SRR8749030Uninduced106.546
SRR8749031Uninduced42.924
SRR8749032Uninduced75.464

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.246
SRR8400027Control-Root10.401

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved