Gene detail information of Glyur000099s00014967.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G10370.10helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
NRXP_004502400.10PREDICTED: putative uncharacterized protein At4g01020, chloroplastic-like [Cicer arietinum]
COGYP_008153931.12.00E-92ATP-dependent helicase [Sorangium cellulosum So0157-2]
Swissprottr|P0CE10|Y4102_ARATH0Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBLtr|G7J375|G7J375_MEDTR0Helicase, IBR and zinc finger protein {ECO:0000313|EMBL:AES72168.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00099344806353598+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12818DHX8, PRP22 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000099s00014967.1PF00270.24DEAD2854391.60E-06
Glyur000099s00014967.1PF00271.26Helicase_C5216077.00E-13
Glyur000099s00014967.1PF04408.18HA26697641.10E-11
Glyur000099s00014967.1PF07717.11OB_NTP_bind8279112.30E-12
Glyur000099s00014967.1PF01485.16IBR160816671.50E-07
Glyur000099s00014967.1PF01485.16IBR168017251.30E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.286
SRR1783600control15.355
SRR1783602moderate drought stress20.613
SRR1811619moderate drought stress20.416

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.402
DRR006520Root Summer glycyrrhizin high producing strain15.304
DRR006521Root Winter glycyrrhizin high producing strain6.500
DRR006522Root Winter glycyrrhizin high producing strain6.331
DRR006523Root Summer glycyrrhizin low producing strain14.197
DRR006524Root Summer glycyrrhizin low producing strain14.271
DRR006525Leaf Summer glycyrrhizin high producing strain7.393
DRR006526Leaf Summer glycyrrhizin high producing strain7.307

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.573
SRR2868004Drought Stress(Tissue:root)19.637
SRR2967015Control (Tissue:root)20.944

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.824
SRR9715740Leave8.639
SRR9715741Leave7.058
SRR9715739Root6.180
SRR9715742Root13.708
SRR9715743Root11.829

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.525
SRR8749028MeJA induced 9h10.196
SRR8749029MeJA induced 9h5.070
SRR8749030Uninduced7.048
SRR8749031Uninduced2.015
SRR8749032Uninduced1.758

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.266
SRR8400027Control-Root16.736

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved