Gene detail

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Gene detail information of Glyur000100s00008360.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64060.1	0	respiratory burst oxidase protein F
NR	AEP25513.1	0	putative respiratory burst oxidase-like protein C [Vicia faba]
COG	YP_007146260.1	3.00E-76	putative ferric reductase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|O48538\|RBOHF_ARATH	0	Respiratory burst oxidase homolog protein F
trEMBL	tr\|G4XDS2\|G4XDS2_VICFA	0	Putative respiratory burst oxidase-like protein C {ECO:0000313\|EMBL:AEP25513.1}

Sequence

Transcript Sequence

>Glyur000100s00008360.2
ATGAAGGGTATTCCGAAGCACGAGCGCCGCTGGGCCTCCGATTCCGTTCCCGGAAAAGCAACCGTCAGCACCGGAACTTCGCCGGGAACTGAGTCCAATTCCGCCGCCGAGGAGTTTGTGGAAGTCACTCTTGATCTTCGAGAAGATGACACCATCGTTCTCCGGAGTGTTGAGCCAGCCTCTGTTATTAACGTCGACGATGGCGTCGCCGGTAGCGGATACGATACTCCGGCCTCTGTTCCGCGGTCGCCGACGATCCGGAGGACCTCGTCGAGAGGCCTGCGGCAGTTCTCGCAGGAACTGAAAGCCGAGGCGGTTGCCAAGGCCAGGCAATTCTCGCACGAGCTTAAAGCAGAGCTTCGGCGGTTCTCGTGGAGCCACGGCCAAGCTTCACGCACTCTTTCATCTTCCTCTGCTCAGAATGGTACCGGAGGTGGTGCCGGCGGCGGAGTTGAAACGGCCTTGGCGGCTAGAGCTCTCAGGAAGCAACGCGCGCAGCTTGATCGTACTCGCTCCGGTGCTCATAAAGCACTCCGTGGTTTGAGATTCATCAGCAGCAAATCCAACGGTGTTGATGCGTGGAACGAGGTGCAGAGCAACTTCGATAGGCTAGCCAAGGACGGTTTTCTCCATCGCGCCGATTTCGGTCAATGCATAGGGATGAGAGATTCCAAGGAATTTGCTCTGGAACTCTTTGATGCTCTGGGTCGTAAACGTAGATTGAAAGTTGACAAGATCAACAGGGATGAACTTTTCGAATTCTGGTCGCAAATTACCGAACAAAGTTTTGATTCGCGGCTCCAGATCTTCTTCGACATGGTGGACAAGAACGAAGATGGAAGAATCACCGAAGAAGAAGTGAAAGAGATCATCATGTTAAGCGCTTCTGCAAATAAGTTATCCAGATTGAAGGAGCAGGCCGAAGAATATGCAGCTCTGATCATGGAAGAGTTAGACCCCGAAAGACTTGGCTACATCGAGTATGTTTTACACGATTCAACCTCTGATAGTTTTGCGGTATTTTGGATGGTTATTATTTCACCGCAGCTATGGCAATTGGAGACGCTTCTTTTACAAAAGGACACGTATCTCAACTACAGCCAAGCTCTGAGCTATACAAGCCAAGCTTTGAGCCAGAACCTACAGGGGCTAAGAAAGAAAAGTCCTATACGTAGGATAAGCCGCAGATTTCTTTACTATTTGCAAGAGAATTGGAAGAGACTTTGGCTTTTAACATTGTGGGTTTGCATAATGATCGGGCTGTTCATGTGGAAGTTTATTCAGTACAAGCAAAAGGATGCTTTTCAGATCATGGGTTACTGTCTCCTCACGGCCAAAGGTGCGGCTGAGACTCTAAAGTTCAACATGGCACTTATACTCTTGCCCGTCTGCAGAAACATCATAACTTGGCTCAGGTCTACCAAGCTGTCTTACGTTGTACCTTTTGATGACAACATCAACTTTCATAAGGTACGNATTAATATTACCGGAAACACAATTGCTGGAGCCATCGTGATTGGTGTTATACTACATGTCGGGGATCANCTTGCTTGTGATTTTCCAAGACTTGTAAGTTCGTCTGAAGCTGATTATGATAAGTATTTGAATGGTGTATTTGGTGATCACAAACCCAGTTATTGGGACTTAGTTAAAGGGGTCGAGGGTGTGACTGGGATTTTGATGGTGGTTTTAATGGCAATAGCATTTACGCTCGCAACCAAATGGTTCAGGAGAAATCTCATTAAGCTGCCTAAACCTTTTAGTAGGCTCACTGGCTTCAACGCCTTCTGGTATTCACACCATCTGTTTGTCATTGTCTATGTCCTGCTCATCATCCACGGGGTAAAACTTTACCTCGTGCACAAATGGTACTATAAAACGACATGGATGTATCTTGCGGTTCCCGTTTTACTTTATGCGTCAGAAAGAACGCTCAGATTGTTTCGCTCTGGTTTCTATACAGTCCGTCTTATAAAGGTTGCTATATATCCTGGAAACGTTCTCACATTGCAAATGTCTAAGCCTCCTCAATTTCGCTACAAGAGCGGACAATACATGTTTGTACAATGTTCTGCTGTTTCTCCGTTTGAGTGGCATCCGTTTTCTATTACTTCTGCCCCTGGGGATGACTATCTGAGTGTTCACATTCGGCAACTGGGTGACTGGACTCAGGAGCTTAAAAGGGTATTCTCTGAGGCCTGTGAGCCTCCTGTTTCTGGGAAGAGTGGGCTTCTCAGGGCTGATGAAACGACAAAAAAAAGTTTGCCGAAGTTAAAGATAGATGGACCTTATGGTGCACCAGCACAAGATTATAGAAAATATGACGTTTTGTTACTCGTCGGTCTCGGAATAGGAGCAACACCTTTCATCAGCATTCTGAAAGATCTGCTCAACAACATTATCAAAATGGAGGAGCTGGCGGATTTAGTCTCTGATACAAGTAGAGGTTCAGACCTTAGTGTTGGGAGTACTGATTCTCCGTCTCTTAATAAAATTGCTCCAAAACGGAAGAAACCACTGAAGACTACCAATGCTTATTTCTACTGGGTTACAAGAGAGCAAGGCTCTTTTGATTGGTTCAAAGGAGTCATGAATGAAGTAGCTGAGCTTGATCAAAGGGGTGTCATTGAGATGCACAACTACTTGACTAGCGTATACGAGGAAGGTGATGCTAGATCTGCCCTCATCACCATGGTTCAAGCACTTAACCATGCCAAAAATGGAGTTGATATTGTTTCTGGGACTAGGGTACGAACTCATTTTGCTAGGCCTAACTGGAAGAAGGTTTTCTCTAAAATGTGTTCCAAGCACTATAATGGACGAATAGGGGTATTTTATTGTGGCGCACCAGTTTTGGCCAAAGAACTTAGCAAGCTCTGTTTCGAGTTCAATGAAAAGGGTCCAACAAAATTTGAGTTCCACAAGGAGCACTTCTAAGGAATCTGGACGGAGCTCCCCCATCTGTGCTTAGTTAACACAGTCACATCACAACTTAAACCCATTTTAGCAACTTGGCGGCACCAGATTGTATGATTATGTTCAATAAGCTAAAACCTTTTTGTACAGAATGTGAAGCATTGTACATACCGGACAGCAAAATTGTTGGCATTTCATCATACACGTGGCTGCAGAGCAGAAGAGATAACCGCAGCTTATGTACCGTGCAATACAATACAGTTTACATTGGAGAAGTTGACCTGATTGGGAGCTATACATTGATTATTGGCAGATAGATCCGCAGTGAATTGGAGATAGACAGTTTTGGGGAAAAAAAGATAAAAGGAGGTAAGGGGACTTGAGTAAATTCCAGGAACTCTATAAAAAATGCGGGTGAAACAGGTGACTCGCCCCGGAATCTTCAATGTCAAGTGAAGGAGAGAGAAAAACACAAAATCAAGTATAATACGATCTACCATGATTTCTATATAGTCCACTATGCTTGCTTTTATGACTTTCTCTCTCCAAAACACAAAAGTAAACATGAAAGAATGGTTTTCAAGTCAACTAATCCCTGTTTTTGCTTGGATTTCCTATCCAGGGAAGGTCTATATGTATGTAAATGAGACTAATATAGTGTTTTCTTTTTTCTTTTTATAAGGTGACCACTTGTATTATCCTTTTATTTTATTTTTTATCATATACATTAGGGGAAACTTGTTAATAGTGATGGGTGCGAATTAAACAAATGTTGATGGAATGTTAATGTCCTCATCTGGTCAAATACCTACGTTAGACTATCTGGACGTGGTTTACAAACCAGAT

Protein Sequence

>Glyur000100s00008360.2
MKGIPKHERRWASDSVPGKATVSTGTSPGTESNSAAEEFVEVTLDLREDDTIVLRSVEPASVINVDDGVAGSGYDTPASVPRSPTIRRTSSRGLRQFSQELKAEAVAKARQFSHELKAELRRFSWSHGQASRTLSSSSAQNGTGGGAGGGVETALAARALRKQRAQLDRTRSGAHKALRGLRFISSKSNGVDAWNEVQSNFDRLAKDGFLHRADFGQCIGMRDSKEFALELFDALGRKRRLKVDKINRDELFEFWSQITEQSFDSRLQIFFDMVDKNEDGRITEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPERLGYIEYVLHDSTSDSFAVFWMVIISPQLWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGLRKKSPIRRISRRFLYYLQENWKRLWLLTLWVCIMIGLFMWKFIQYKQKDAFQIMGYCLLTAKGAAETLKFNMALILLPVCRNIITWLRSTKLSYVVPFDDNINFHKVRINITGNTIAGAIVIGVILHVGDXLACDFPRLVSSSEADYDKYLNGVFGDHKPSYWDLVKGVEGVTGILMVVLMAIAFTLATKWFRRNLIKLPKPFSRLTGFNAFWYSHHLFVIVYVLLIIHGVKLYLVHKWYYKTTWMYLAVPVLLYASERTLRLFRSGFYTVRLIKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQCSAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACEPPVSGKSGLLRADETTKKSLPKLKIDGPYGAPAQDYRKYDVLLLVGLGIGATPFISILKDLLNNIIKMEELADLVSDTSRGSDLSVGSTDSPSLNKIAPKRKKPLKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVFSKMCSKHYNGRIGVFYCGAPVLAKELSKLCFEFNEKGPTKFEFHKEHF

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	50717	60994	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13447	RBOH	EC:1.6.3.- 1.11.1.-	MAPK signaling pathway - plant	map04016
K13447	RBOH	EC:1.6.3.- 1.11.1.-	Plant-pathogen interaction	map04626

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component GO:0016020 membrane molecular_function GO:0004601 peroxidase activity GO:0005509 calcium ion binding GO:0016491 oxidoreductase activity GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008360.2	PF08414.5	NADPH_Ox	166	265	8.10E-43
Glyur000100s00008360.2	PF13405.1	EF-hand_6	267	291	0.0014
Glyur000100s00008360.2	PF01794.14	Ferric_reduct	447	611	4.90E-11
Glyur000100s00008360.2	PF08022.7	FAD_binding_8	653	767	4.00E-31
Glyur000100s00008360.2	PF08030.7	NAD_binding_6	774	960	6.50E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.584
SRR1783600	control	17.823
SRR1783602	moderate drought stress	11.958
SRR1811619	moderate drought stress	12.122

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.494
DRR006520	Root Summer glycyrrhizin high producing strain	3.535
DRR006521	Root Winter glycyrrhizin high producing strain	1.214
DRR006522	Root Winter glycyrrhizin high producing strain	1.144
DRR006523	Root Summer glycyrrhizin low producing strain	3.649
DRR006524	Root Summer glycyrrhizin low producing strain	3.713
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.125
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.019

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	43.187
SRR2868004	Drought Stress(Tissue:root)	51.357
SRR2967015	Control (Tissue:root)	35.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	18.367
SRR9715740	Leave	21.249
SRR9715741	Leave	20.975
SRR9715739	Root	7.404
SRR9715742	Root	26.827
SRR9715743	Root	24.197

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	82.642
SRR8749028	MeJA induced 9h	112.241
SRR8749029	MeJA induced 9h	101.506
SRR8749030	Uninduced	27.531
SRR8749031	Uninduced	37.061
SRR8749032	Uninduced	31.783

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	32.156
SRR8400027	Control-Root	22.699