Gene detail information of Glyur000100s00008379.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G23500.10Pectin lyase-like superfamily protein
NRXP_003525377.20PREDICTED: probable polygalacturonase-like isoform X1 [Glycine max]
COGYP_001179193.15.00E-68galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprottr|A7PZL3|PGLR_VITVI0Probable polygalacturonase
trEMBLtr|I1K6E9|I1K6E9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G37490.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00100189481192768-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH28


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004650  polygalacturonase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000100s00008379.1PF00295.12Glyco_hydro_281634461.20E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control75.880
SRR1783600control76.315
SRR1783602moderate drought stress23.671
SRR1811619moderate drought stress23.643

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain82.226
DRR006520Root Summer glycyrrhizin high producing strain81.080
DRR006521Root Winter glycyrrhizin high producing strain0.442
DRR006522Root Winter glycyrrhizin high producing strain0.362
DRR006523Root Summer glycyrrhizin low producing strain76.572
DRR006524Root Summer glycyrrhizin low producing strain76.172
DRR006525Leaf Summer glycyrrhizin high producing strain10.198
DRR006526Leaf Summer glycyrrhizin high producing strain10.001

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)91.505
SRR2868004Drought Stress(Tissue:root)174.328
SRR2967015Control (Tissue:root)78.995

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.404
SRR9715740Leave7.680
SRR9715741Leave8.386
SRR9715739Root9.265
SRR9715742Root62.475
SRR9715743Root48.747

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.616
SRR8749028MeJA induced 9h0.360
SRR8749029MeJA induced 9h0.762
SRR8749030Uninduced0.434
SRR8749031Uninduced1.694
SRR8749032Uninduced5.426

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root165.532
SRR8400027Control-Root191.900

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved