Gene detail information of Glyur000100s00008389.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41380.1 | 1.00E-47 | CCT motif family protein |
| NR | XP_006580560.1 | 4.10E-131 | PREDICTED: uncharacterized protein LOC102665661 [Glycine max] |
| Swissprot | tr|Q9SK53|COL3_ARATH | 3.00E-10 | Zinc finger protein CONSTANS-LIKE 3 |
| trEMBL | tr|K7KS13|K7KS13_SOYBN | 2.00E-131 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G37600.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00100 | 274410 | 276504 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000100s00008389.1 | PF06203.9 | CCT | 239 | 283 | 5.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.058 |
| SRR1783600 | control | 0.057 |
| SRR1783602 | moderate drought stress | 0.240 |
| SRR1811619 | moderate drought stress | 0.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.468 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.503 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.263 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.176 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.449 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.689 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.747 |
| SRR2967015 | Control (Tissue:root) | 11.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.027 |
| SRR9715740 | Leave | 0.050 |
| SRR9715741 | Leave | 0.002 |
| SRR9715739 | Root | 0.527 |
| SRR9715742 | Root | 2.028 |
| SRR9715743 | Root | 1.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.002 |
| SRR8749028 | MeJA induced 9h | 0.004 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.002 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.367 |
| SRR8400027 | Control-Root | 1.318 |