Gene detail information of Glyur000100s00008390.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41370.10homolog of xeroderma pigmentosum complementation group B 1
NRXP_006580561.10PREDICTED: DNA repair helicase XPB1-like isoform X2 [Glycine max]
COGYP_007206124.13.00E-83DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
Swissprottr|Q38861|XPB1_ARATH0DNA repair helicase XPB1
trEMBLtr|K7KS14|K7KS14_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G37610.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00100285503293212-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10843ERCC3, XPB EC:3.6.4.12 Basal transcription factors map03022
Nucleotide excision repairmap03420


Gene Ontology

biological_process

GO:0006289  nucleotide-excision repair


molecular_function

GO:0003677  DNA binding

GO:0004003  ATP-dependent DNA helicase activity

GO:0005524  ATP binding

GO:0016787  hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000100s00008390.1PF13625.1Helicase_C_3631862.40E-26
Glyur000100s00008390.1PF04851.10ResIII2784342.00E-13
Glyur000100s00008390.1PF00271.26Helicase_C5456139.30E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.902
SRR1783600control40.976
SRR1783602moderate drought stress46.269
SRR1811619moderate drought stress46.027

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain49.972
DRR006520Root Summer glycyrrhizin high producing strain49.527
DRR006521Root Winter glycyrrhizin high producing strain87.099
DRR006522Root Winter glycyrrhizin high producing strain84.892
DRR006523Root Summer glycyrrhizin low producing strain47.740
DRR006524Root Summer glycyrrhizin low producing strain47.593
DRR006525Leaf Summer glycyrrhizin high producing strain28.218
DRR006526Leaf Summer glycyrrhizin high producing strain28.022

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.012
SRR2868004Drought Stress(Tissue:root)59.007
SRR2967015Control (Tissue:root)53.344

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.370
SRR9715740Leave28.468
SRR9715741Leave37.714
SRR9715739Root4.030
SRR9715742Root22.625
SRR9715743Root19.220

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h72.863
SRR8749028MeJA induced 9h67.300
SRR8749029MeJA induced 9h60.192
SRR8749030Uninduced37.124
SRR8749031Uninduced35.700
SRR8749032Uninduced34.183

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.493
SRR8400027Control-Root42.010

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved