Gene detail information of Glyur000100s00008391.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41350.11.00E-34RING/U-box superfamily protein
NRXP_004503690.11.51E-91PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Cicer arietinum]
Swissprottr|Q8LE94|RING3_ARATH4.00E-21E3 ubiquitin-protein ligase At3g02290
trEMBLtr|I1KPD0|I1KPD0_SOYBN2.00E-91Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G01960.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00100297482300879+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000100s00008391.1PF13639.1zf-RING_21281691.90E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.393
SRR1783600control38.575
SRR1783602moderate drought stress37.109
SRR1811619moderate drought stress35.763

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain43.839
DRR006520Root Summer glycyrrhizin high producing strain43.267
DRR006521Root Winter glycyrrhizin high producing strain128.240
DRR006522Root Winter glycyrrhizin high producing strain126.354
DRR006523Root Summer glycyrrhizin low producing strain58.574
DRR006524Root Summer glycyrrhizin low producing strain60.382
DRR006525Leaf Summer glycyrrhizin high producing strain19.179
DRR006526Leaf Summer glycyrrhizin high producing strain20.081

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)63.365
SRR2868004Drought Stress(Tissue:root)90.985
SRR2967015Control (Tissue:root)77.384

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave54.190
SRR9715740Leave57.527
SRR9715741Leave89.705
SRR9715739Root24.132
SRR9715742Root42.337
SRR9715743Root35.428

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h58.218
SRR8749028MeJA induced 9h92.429
SRR8749029MeJA induced 9h99.229
SRR8749030Uninduced128.017
SRR8749031Uninduced201.633
SRR8749032Uninduced151.027

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root49.773
SRR8400027Control-Root42.655

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved