Gene detail information of Glyur000100s00008394.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G63800.17.00E-77ubiquitin-conjugating enzyme 5
NRXP_003525387.16.57E-123PREDICTED: ubiquitin-conjugating enzyme E2 5-like isoform X1 [Glycine max]
COGYP_008797956.17.00E-13ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P42749|UBC5_ARATH6.00E-107Ubiquitin-conjugating enzyme E2 5
trEMBLtr|I1K6H0|I1K6H0_SOYBN2.00E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G37650.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00100311174314749+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10576UBE2H, UBC8 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000100s00008394.1PF00179.21UQ_con121426.70E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.801
SRR1783600control15.327
SRR1783602moderate drought stress10.470
SRR1811619moderate drought stress10.268

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.157
DRR006520Root Summer glycyrrhizin high producing strain20.914
DRR006521Root Winter glycyrrhizin high producing strain12.377
DRR006522Root Winter glycyrrhizin high producing strain12.901
DRR006523Root Summer glycyrrhizin low producing strain21.709
DRR006524Root Summer glycyrrhizin low producing strain21.368
DRR006525Leaf Summer glycyrrhizin high producing strain8.007
DRR006526Leaf Summer glycyrrhizin high producing strain8.274

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.645
SRR2868004Drought Stress(Tissue:root)19.151
SRR2967015Control (Tissue:root)21.736

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.864
SRR9715740Leave8.766
SRR9715741Leave6.113
SRR9715739Root3.231
SRR9715742Root5.450
SRR9715743Root5.037

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.863
SRR8749028MeJA induced 9h8.942
SRR8749029MeJA induced 9h14.778
SRR8749030Uninduced4.771
SRR8749031Uninduced3.470
SRR8749032Uninduced3.965

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.251
SRR8400027Control-Root24.489

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved