Gene detail information of Glyur000101s00010291.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24870.2 | 8.00E-89 | RING/U-box superfamily protein |
| NR | XP_004501243.1 | 0 | PREDICTED: cell wall protein AWA1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q7XTV7|HIP1_ORYSJ | 1.00E-35 | Probable E3 ubiquitin-protein ligase HIP1 |
| trEMBL | tr|I1JUM6|I1JUM6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G07980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00101 | 24177 | 27206 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000101s00010291.1 | PF13639.1 | zf-RING_2 | 459 | 501 | 5.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.492 |
| SRR1783600 | control | 7.614 |
| SRR1783602 | moderate drought stress | 8.700 |
| SRR1811619 | moderate drought stress | 8.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.901 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.447 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.922 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.423 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.442 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.221 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.765 |
| SRR2868004 | Drought Stress(Tissue:root) | 39.231 |
| SRR2967015 | Control (Tissue:root) | 41.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 28.847 |
| SRR9715740 | Leave | 43.096 |
| SRR9715741 | Leave | 41.423 |
| SRR9715739 | Root | 3.386 |
| SRR9715742 | Root | 9.751 |
| SRR9715743 | Root | 6.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.418 |
| SRR8749028 | MeJA induced 9h | 37.497 |
| SRR8749029 | MeJA induced 9h | 45.192 |
| SRR8749030 | Uninduced | 24.442 |
| SRR8749031 | Uninduced | 30.692 |
| SRR8749032 | Uninduced | 54.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.693 |
| SRR8400027 | Control-Root | 15.274 |