Gene detail information of Glyur000101s00010293.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24540.1 | 9.00E-97 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_003527811.2 | 1.78E-164 | PREDICTED: F-box protein AFR-like [Glycine max] |
| COG | YP_004368597.1 | 4.00E-13 | Kelch repeat type 1-containing protein [Marinithermus hydrothermalis DSM 14884] |
| Swissprot | tr|Q8LAW2|AFR_ARATH | 5.00E-118 | F-box protein AFR |
| trEMBL | tr|K7KTQ4|K7KTQ4_SOYBN | 7.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G08050.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00101 | 43692 | 44753 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.234 |
| SRR1783600 | control | 5.369 |
| SRR1783602 | moderate drought stress | 6.960 |
| SRR1811619 | moderate drought stress | 7.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.143 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.693 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.715 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.014 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.478 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.840 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.475 |
| SRR2967015 | Control (Tissue:root) | 23.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.829 |
| SRR9715740 | Leave | 14.764 |
| SRR9715741 | Leave | 25.005 |
| SRR9715739 | Root | 36.495 |
| SRR9715742 | Root | 31.517 |
| SRR9715743 | Root | 34.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 72.955 |
| SRR8749028 | MeJA induced 9h | 16.787 |
| SRR8749029 | MeJA induced 9h | 21.283 |
| SRR8749030 | Uninduced | 3.616 |
| SRR8749031 | Uninduced | 0.708 |
| SRR8749032 | Uninduced | 0.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.755 |
| SRR8400027 | Control-Root | 25.443 |