Gene detail information of Glyur000101s00010299.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G24580.15.00E-126FAD-dependent oxidoreductase family protein
NRXP_004501233.10PREDICTED: probable sarcosine oxidase-like [Cicer arietinum]
COGYP_003401598.15.00E-45sarcosine oxidase [Haloterrigena turkmenica DSM 5511]
Swissprottr|Q9SJA7|SOX_ARATH2.00E-155Probable sarcosine oxidase
trEMBLtr|G7J2T2|G7J2T2_MEDTR0Monomeric form sarcosine oxidase {ECO:0000313|EMBL:AES73801.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001018076081954+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00306PIPOX EC:1.5.3.1 1.5.3.7 Glycine, serine and threonine metabolism map00260
Lysine degradationmap00310
Peroxisomemap04146


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000101s00010299.1PF01266.19DAO71941.50E-32
Glyur000101s00010299.1PF01266.19DAO2583281.10E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.609
SRR1783600control27.990
SRR1783602moderate drought stress20.504
SRR1811619moderate drought stress19.719

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.041
DRR006520Root Summer glycyrrhizin high producing strain29.492
DRR006521Root Winter glycyrrhizin high producing strain127.215
DRR006522Root Winter glycyrrhizin high producing strain125.025
DRR006523Root Summer glycyrrhizin low producing strain27.855
DRR006524Root Summer glycyrrhizin low producing strain26.277
DRR006525Leaf Summer glycyrrhizin high producing strain8.342
DRR006526Leaf Summer glycyrrhizin high producing strain8.208

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.012
SRR2868004Drought Stress(Tissue:root)13.759
SRR2967015Control (Tissue:root)14.271

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.232
SRR9715740Leave11.107
SRR9715741Leave9.364
SRR9715739Root62.830
SRR9715742Root24.100
SRR9715743Root32.395

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.636
SRR8749028MeJA induced 9h39.812
SRR8749029MeJA induced 9h34.432
SRR8749030Uninduced9.686
SRR8749031Uninduced4.598
SRR8749032Uninduced14.301

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.335
SRR8400027Control-Root41.394

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved