Gene detail information of Glyur000101s00010300.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G24580.12.00E-153FAD-dependent oxidoreductase family protein
NRXP_004501234.10PREDICTED: probable sarcosine oxidase-like [Cicer arietinum]
COGYP_004446819.14.00E-54sarcosine oxidase [Haliscomenobacter hydrossis DSM 1100]
Swissprottr|Q9SJA7|SOX_ARATH0Probable sarcosine oxidase
trEMBLtr|G7J2T2|G7J2T2_MEDTR0Monomeric form sarcosine oxidase {ECO:0000313|EMBL:AES73801.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001018669187872-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00306PIPOX EC:1.5.3.1 1.5.3.7 Glycine, serine and threonine metabolism map00260
Lysine degradationmap00310
Peroxisomemap04146


Gene Ontology

biological_process

GO:0046653  tetrahydrofolate metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0008115  sarcosine oxidase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000101s00010300.1PF01266.19DAO73676.00E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.458
SRR1783600control7.229
SRR1783602moderate drought stress14.596
SRR1811619moderate drought stress15.660

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.544
DRR006520Root Summer glycyrrhizin high producing strain8.043
DRR006521Root Winter glycyrrhizin high producing strain4.319
DRR006522Root Winter glycyrrhizin high producing strain5.066
DRR006523Root Summer glycyrrhizin low producing strain17.373
DRR006524Root Summer glycyrrhizin low producing strain16.711
DRR006525Leaf Summer glycyrrhizin high producing strain5.038
DRR006526Leaf Summer glycyrrhizin high producing strain5.173

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)74.113
SRR2868004Drought Stress(Tissue:root)59.820
SRR2967015Control (Tissue:root)38.911

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.356
SRR9715740Leave11.304
SRR9715741Leave20.471
SRR9715739Root8.943
SRR9715742Root6.227
SRR9715743Root7.624

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.868
SRR8749028MeJA induced 9h0.986
SRR8749029MeJA induced 9h0.738
SRR8749030Uninduced0.647
SRR8749031Uninduced0.292
SRR8749032Uninduced0.623

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.538
SRR8400027Control-Root13.330

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved